##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551988_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 470123 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.246724793298775 33.0 31.0 34.0 30.0 34.0 2 32.37100078064677 34.0 31.0 34.0 30.0 34.0 3 32.34241251757519 34.0 31.0 34.0 30.0 34.0 4 35.92299249345384 37.0 35.0 37.0 35.0 37.0 5 35.98485290019846 37.0 35.0 37.0 35.0 37.0 6 35.97206050331509 37.0 35.0 37.0 35.0 37.0 7 36.15661645994771 37.0 36.0 37.0 35.0 37.0 8 36.01003354441284 37.0 36.0 37.0 35.0 37.0 9 37.89794160251679 39.0 38.0 39.0 35.0 39.0 10 37.566626180808 39.0 37.0 39.0 35.0 39.0 11 37.534243166150134 39.0 37.0 39.0 35.0 39.0 12 37.471178819160095 39.0 37.0 39.0 35.0 39.0 13 37.454827779113124 39.0 37.0 39.0 35.0 39.0 14 38.738334435881676 40.0 38.0 41.0 35.0 41.0 15 38.7738464189159 40.0 38.0 41.0 35.0 41.0 16 38.77206816088555 40.0 38.0 41.0 35.0 41.0 17 38.66261808080013 40.0 38.0 41.0 35.0 41.0 18 38.504780663783734 40.0 38.0 41.0 34.0 41.0 19 38.34296769143394 40.0 37.0 41.0 34.0 41.0 20 38.14760392493029 40.0 36.0 41.0 34.0 41.0 21 38.06307498250458 40.0 36.0 41.0 34.0 41.0 22 38.08670496869968 40.0 36.0 41.0 34.0 41.0 23 38.04221023008872 40.0 35.0 41.0 34.0 41.0 24 37.977305939084026 40.0 35.0 41.0 34.0 41.0 25 37.83560897892679 40.0 35.0 41.0 34.0 41.0 26 37.840571510009084 40.0 35.0 41.0 34.0 41.0 27 37.837419143500746 40.0 35.0 41.0 34.0 41.0 28 37.73120651403994 40.0 35.0 41.0 34.0 41.0 29 37.66488982670493 40.0 35.0 41.0 33.0 41.0 30 37.45717610072258 40.0 35.0 41.0 33.0 41.0 31 37.33328086479496 40.0 35.0 41.0 33.0 41.0 32 37.078470953346255 40.0 35.0 41.0 32.0 41.0 33 36.82914471319208 40.0 35.0 41.0 31.0 41.0 34 36.55909410941392 40.0 35.0 41.0 31.0 41.0 35 36.389021596475814 40.0 35.0 41.0 30.0 41.0 36 36.26133160896191 39.0 35.0 41.0 30.0 41.0 37 36.228308336329 39.0 35.0 41.0 30.0 41.0 38 36.111836689547204 39.0 35.0 41.0 29.0 41.0 39 36.070962280084146 39.0 35.0 41.0 29.0 41.0 40 35.967321318038046 39.0 35.0 41.0 29.0 41.0 41 35.8413840633196 39.0 35.0 41.0 28.0 41.0 42 35.718241821821096 39.0 35.0 41.0 27.0 41.0 43 35.62051846006258 39.0 35.0 41.0 27.0 41.0 44 35.634731761687895 39.0 35.0 41.0 27.0 41.0 45 35.585087306938824 39.0 35.0 41.0 27.0 41.0 46 35.5106642304248 38.0 35.0 41.0 27.0 41.0 47 35.416108124894976 38.0 35.0 41.0 26.0 41.0 48 35.37255356576896 38.0 35.0 41.0 26.0 41.0 49 35.33004554127324 38.0 35.0 40.0 27.0 41.0 50 35.23388560015145 38.0 35.0 40.0 26.0 41.0 51 34.41254097331975 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 7.0 10 7.0 11 6.0 12 13.0 13 11.0 14 10.0 15 22.0 16 48.0 17 85.0 18 154.0 19 298.0 20 512.0 21 922.0 22 1404.0 23 1859.0 24 2615.0 25 4127.0 26 6204.0 27 7632.0 28 7694.0 29 7124.0 30 7355.0 31 8359.0 32 9869.0 33 13213.0 34 25312.0 35 35594.0 36 34406.0 37 47122.0 38 85524.0 39 162444.0 40 167.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.91529876223882 18.715527638511624 22.646413810853755 18.722759788395805 2 36.521718784233066 23.955007519308776 23.12139589001176 16.4018778064464 3 29.458886291459898 23.924802658027794 30.957004868938554 15.65930618157376 4 26.138478653458776 23.042054951576503 32.7790812191703 18.04038517579442 5 25.320607585674388 26.481793062666583 29.54779919297716 18.649800158681877 6 24.35511557613646 32.522339898281935 28.545295592855485 14.577248932726118 7 73.77835162287316 5.540252231862725 16.123652746196207 4.5577433990679035 8 75.04036177766244 6.182637309810411 14.223511719273466 4.5534891932536805 9 69.51031963975385 6.153921420564405 16.21979779759765 8.115961142084092 10 36.33580999015151 23.298796272464866 23.294967487232064 17.070426250151556 11 28.691427562574052 23.76378096795945 28.923069069158498 18.621722400308006 12 25.570967597841417 20.67139876160069 32.952652816390604 20.804980824167295 13 23.818022092090793 20.859009238007925 35.35564097055451 19.967327699346768 14 20.573764738164268 24.392552587301623 33.81030070853798 21.223381965996133 15 19.66357740421124 22.670450073704114 36.80185823709966 20.864114284984993 16 22.885925598194515 22.438383146538246 33.40593844589607 21.269752809371166 17 21.67262609997809 23.353462817177633 32.69080644852517 22.283104634319102 18 23.249022064438453 22.33394239379907 32.52446700118905 21.892568540573425 19 22.965053826339066 24.20451669031296 30.8987222492837 21.931707234064277 20 24.770751484186054 24.180905848044024 31.397740591292067 19.650602076477856 21 23.325810479385183 26.142094728400867 31.31308189558903 19.219012896624925 22 22.18079098448704 22.550906890324445 31.985884545108405 23.282417580080107 23 22.33011360856627 24.692899517785772 31.911648653650214 21.065338219997745 24 22.238222762979053 23.770374986971497 31.65639630479683 22.335005945252625 25 22.104002569540313 25.23594888997135 30.283351378256327 22.376697162232013 26 21.435454125835154 24.061149954373644 31.971207535049338 22.532188384741865 27 23.403237025204042 23.373244874213768 30.688139061479657 22.535379039102533 28 20.921971484058428 25.058761217808957 31.733184719743555 22.28608257838906 29 23.534479274572824 23.427273288054405 30.63538690938329 22.402860527989485 30 24.229191084035453 23.28645907560362 31.714466214160975 20.769883626199952 31 24.776494662035255 23.04694728826286 29.78943808322503 22.38711996647686 32 24.726295033427423 23.761228444470913 29.638839197401527 21.87363732470013 33 23.93862882692402 23.412808988286045 29.263405534296343 23.385156650493595 34 23.845887140173954 23.995209764253183 30.095740901849087 22.06316219372377 35 24.53038885568245 24.734590734765156 28.763749061415844 21.97127134813655 36 23.789306202844788 27.694454430010868 28.179859313413726 20.33638005373062 37 23.618499839403732 26.230582209336706 28.373212967670163 21.777704983589402 38 21.8272664813251 26.789159432744196 28.648247373559688 22.73532671237102 39 23.87396489854783 24.900504761519855 28.26366716795392 22.961863171978397 40 24.129855378273348 24.53081427626387 29.90791771515114 21.43141263031164 41 21.756646664808997 27.148001693173914 28.547209985471888 22.5481416565452 42 22.90038989796287 26.435634929582257 28.442981943023423 22.220993229431446 43 23.091829159602913 24.91177840692755 28.709507937284496 23.28688449618504 44 23.362396649387502 23.943733873901085 29.319348340753375 23.374521135958037 45 23.52490731149082 22.79679998638654 29.24404889784163 24.43424380428101 46 23.906296862735925 24.50635259283209 28.68610980530627 22.90124073912572 47 21.964251908543083 25.22020832845872 30.92339664300619 21.892143119992003 48 22.364359965370763 24.54123708050872 30.451179797627432 22.64322315649309 49 22.981219808433114 23.763568257668737 30.69069158496819 22.56452034892996 50 21.06618906116059 23.055881120472726 31.49239667065853 24.385533147708152 51 21.640081425499282 22.857847839820643 29.70903359333621 25.79303714134386 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 288.0 1 578.5 2 869.0 3 7142.5 4 13416.0 5 8539.5 6 3663.0 7 3563.5 8 3464.0 9 3416.0 10 3368.0 11 3228.5 12 3089.0 13 3005.5 14 2922.0 15 2647.0 16 2372.0 17 2239.5 18 2107.0 19 2025.0 20 1943.0 21 1902.0 22 1861.0 23 2021.5 24 2182.0 25 2473.5 26 3156.0 27 3547.0 28 4250.0 29 4953.0 30 5598.0 31 6243.0 32 6900.0 33 7557.0 34 8654.5 35 9752.0 36 10306.0 37 10860.0 38 11653.5 39 12447.0 40 14131.5 41 15816.0 42 17620.5 43 19425.0 44 21994.0 45 24563.0 46 32069.5 47 39576.0 48 39019.0 49 38462.0 50 38755.0 51 39048.0 52 36145.0 53 33242.0 54 31101.0 55 28960.0 56 27055.5 57 25151.0 58 23784.5 59 22418.0 60 21667.0 61 20916.0 62 19145.0 63 17374.0 64 15198.5 65 13023.0 66 11206.5 67 9390.0 68 8138.5 69 6887.0 70 6031.5 71 5176.0 72 4560.0 73 3944.0 74 3490.5 75 2491.5 76 1946.0 77 1476.0 78 1006.0 79 823.0 80 640.0 81 469.5 82 299.0 83 213.5 84 128.0 85 73.0 86 18.0 87 10.5 88 3.0 89 2.0 90 1.0 91 2.0 92 3.0 93 2.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 470123.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.37688833675949 #Duplication Level Percentage of deduplicated Percentage of total 1 71.48051182175146 26.002385967942704 2 7.950717933790114 5.784447569491082 3 3.6571252332660062 3.9910450873218912 4 2.58170961403664 3.756582493909972 5 2.021790092750939 3.677321622218376 6 1.7705409906578495 3.864406314768968 7 1.4926216316587395 3.8007851296717208 8 1.3462531603163377 3.91780007086696 9 1.202957761371299 3.938387414331773 >10 6.413457736727597 33.80475895402493 >50 0.047624542267969854 1.2088530089728082 >100 0.029397865597512233 2.2816779723499487 >500 0.002351829247800979 0.5800441189551051 >1k 0.002351829247800979 1.5792941645886787 >5k 5.879573119502448E-4 1.8122101105850317 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8473 1.8022942931956105 No Hit GAATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTC 2438 0.5185876887537942 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCG 2155 0.4583906764825375 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGC 1681 0.3575659986854504 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCC 1110 0.23610842268938131 No Hit GCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC 973 0.20696711286195316 No Hit GAACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCT 658 0.13996337128793954 No Hit CCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC 580 0.12337196861246952 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCT 501 0.10656785564628832 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTT 488 0.10380262186704331 No Hit CGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTG 478 0.10167551895993177 No Hit CTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGCT 476 0.10125009837850946 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 474 0.10082467779708715 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.254205814223086E-4 0.0 0.0 0.10550430419273255 0.0 2 4.254205814223086E-4 0.0 0.0 0.5249689974751288 0.0 3 4.254205814223086E-4 0.0 0.0 0.7951110666782948 0.0 4 4.254205814223086E-4 0.0 0.0 1.2390374433924738 0.0 5 4.254205814223086E-4 0.0 0.0 2.6303754549341343 0.0 6 4.254205814223086E-4 0.0 0.0 3.514399423129692 0.0 7 4.254205814223086E-4 0.0 0.0 4.347798342135994 0.0 8 4.254205814223086E-4 0.0 0.0 5.436662320286393 0.0 9 4.254205814223086E-4 0.0 0.0 6.011192815497221 0.0 10 4.254205814223086E-4 0.0 0.0 7.423376435528574 0.0 11 4.254205814223086E-4 0.0 0.0 8.647736868861978 0.0 12 4.254205814223086E-4 0.0 0.0 9.835723842483775 0.0 13 4.254205814223086E-4 0.0 0.0 10.248807227044837 0.0 14 4.254205814223086E-4 0.0 0.0 10.429398263858607 0.0 15 4.254205814223086E-4 0.0 0.0 10.751016223413872 0.0 16 4.254205814223086E-4 0.0 0.0 11.2168517600713 0.0 17 4.254205814223086E-4 0.0 0.0 11.719911597603181 0.0 18 4.254205814223086E-4 0.0 0.0 12.28167947537134 0.0 19 4.254205814223086E-4 0.0 0.0 12.689657812955334 0.0 20 4.254205814223086E-4 0.0 0.0 13.045734839605805 0.0 21 4.254205814223086E-4 0.0 0.0 13.426698970269483 0.0 22 4.254205814223086E-4 0.0 0.0 13.82978497116712 0.0 23 4.254205814223086E-4 0.0 0.0 14.229893027994802 0.0 24 4.254205814223086E-4 0.0 0.0 14.543640706793754 0.0 25 4.254205814223086E-4 0.0 0.0 14.839095300591547 0.0 26 4.254205814223086E-4 0.0 0.0 15.114555127062491 0.0 27 4.254205814223086E-4 0.0 0.0 15.388100560917037 0.0 28 4.254205814223086E-4 0.0 0.0 15.669516275527894 0.0 29 4.254205814223086E-4 0.0 0.0 15.952846382755151 0.0 30 4.254205814223086E-4 0.0 0.0 16.296586212544376 0.0 31 4.254205814223086E-4 0.0 0.0 16.594167909249283 0.0 32 4.254205814223086E-4 0.0 0.0 16.913871476188145 0.0 33 4.254205814223086E-4 0.0 0.0 17.20932606998594 0.0 34 4.254205814223086E-4 0.0 0.0 17.49478328012031 0.0 35 4.254205814223086E-4 0.0 0.0 17.785558247522456 0.0 36 4.254205814223086E-4 0.0 0.0 18.06016723283056 0.0 37 4.254205814223086E-4 0.0 0.0 18.356472667791195 0.0 38 4.254205814223086E-4 0.0 0.0 18.68574819781206 0.0 39 4.254205814223086E-4 0.0 0.0 19.02097961597284 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAAGTCG 20 7.029027E-4 45.000004 1 TAGTGCG 20 7.029027E-4 45.000004 1 ATTTCGT 20 7.029027E-4 45.000004 12 CGTTTTT 3745 0.0 42.47663 1 GTTAATC 45 1.924127E-8 40.0 40 TAATGCG 35 6.240414E-6 38.571426 1 ATACTAT 65 9.094947E-12 38.076927 45 ATTGGGC 160 0.0 37.968754 4 AGATCGG 30 1.13889575E-4 37.499996 2 CGAGGGT 60 1.546141E-10 37.499996 4 CATATGC 145 0.0 37.241383 33 CGGGTAC 80 0.0 36.562504 6 GGTACCT 160 0.0 36.562504 8 GTTTTTT 4515 0.0 36.1794 2 TATGGGC 175 0.0 36.000004 4 TTGATCC 150 0.0 36.0 17 CGGCGAA 25 0.002105845 36.0 31 CGAAAGG 75 1.8189894E-12 36.0 2 TAGCGCG 25 0.002105845 36.0 1 ACCGAGT 25 0.002105845 36.0 28 >>END_MODULE