Basic Statistics
Measure | Value |
---|---|
Filename | SRR3551986_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 462902 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4673 | 1.0095009310826049 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCC | 952 | 0.20565908118781082 | No Hit |
GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC | 949 | 0.20501099584793325 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCG | 776 | 0.1676380745816609 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC | 774 | 0.16720601768840923 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGC | 611 | 0.13199338088839538 | No Hit |
CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGCT | 564 | 0.12184004389698036 | TruSeq Adapter, Index 15 (95% over 23bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGACGGT | 40 | 6.7993824E-9 | 45.000004 | 28 |
AACCCGA | 20 | 7.028915E-4 | 45.000004 | 24 |
CTAAGCG | 20 | 7.028915E-4 | 45.000004 | 1 |
GCGCATA | 20 | 7.028915E-4 | 45.000004 | 1 |
GCCATAG | 20 | 7.028915E-4 | 45.000004 | 1 |
TCGACGT | 20 | 7.028915E-4 | 45.000004 | 26 |
CTCACGT | 35 | 1.209828E-7 | 45.0 | 45 |
CGAATAT | 25 | 3.8871833E-5 | 45.0 | 14 |
CGTTTTT | 2025 | 0.0 | 41.0 | 1 |
GTAGTAG | 40 | 3.45226E-7 | 39.375004 | 1 |
AACGGGA | 220 | 0.0 | 38.863636 | 4 |
TAGGGTA | 105 | 0.0 | 38.57143 | 5 |
TAGCCGT | 35 | 6.240207E-6 | 38.571426 | 44 |
TAGCATA | 140 | 0.0 | 38.571426 | 30 |
TAAGCGG | 70 | 0.0 | 38.571426 | 2 |
ATGGGCG | 130 | 0.0 | 38.076927 | 5 |
CCCGATC | 65 | 9.094947E-12 | 38.076927 | 41 |
AAACCGG | 30 | 1.1388688E-4 | 37.499996 | 2 |
CTACCCA | 60 | 1.546141E-10 | 37.499996 | 16 |
GCTACGA | 30 | 1.1388688E-4 | 37.499996 | 10 |