SRR3551986_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551986_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	462902
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4673	1.0095009310826049	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCC	952	0.20565908118781082	No Hit
GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	949	0.20501099584793325	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCG	776	0.1676380745816609	No Hit
GAATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC	774	0.16720601768840923	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGC	611	0.13199338088839538	No Hit
CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGCT	564	0.12184004389698036	TruSeq Adapter, Index 15 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	40	6.7993824E-9	45.000004	28
AACCCGA	20	7.028915E-4	45.000004	24
CTAAGCG	20	7.028915E-4	45.000004	1
GCGCATA	20	7.028915E-4	45.000004	1
GCCATAG	20	7.028915E-4	45.000004	1
TCGACGT	20	7.028915E-4	45.000004	26
CTCACGT	35	1.209828E-7	45.0	45
CGAATAT	25	3.8871833E-5	45.0	14
CGTTTTT	2025	0.0	41.0	1
GTAGTAG	40	3.45226E-7	39.375004	1
AACGGGA	220	0.0	38.863636	4
TAGGGTA	105	0.0	38.57143	5
TAGCCGT	35	6.240207E-6	38.571426	44
TAGCATA	140	0.0	38.571426	30
TAAGCGG	70	0.0	38.571426	2
ATGGGCG	130	0.0	38.076927	5
CCCGATC	65	9.094947E-12	38.076927	41
AAACCGG	30	1.1388688E-4	37.499996	2
CTACCCA	60	1.546141E-10	37.499996	16
GCTACGA	30	1.1388688E-4	37.499996	10