##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551986_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 462902 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.350125944584384 33.0 31.0 34.0 30.0 34.0 2 32.443158595123805 34.0 31.0 34.0 31.0 34.0 3 32.43633857706383 34.0 31.0 34.0 30.0 34.0 4 35.979544266389 37.0 35.0 37.0 35.0 37.0 5 36.04446297488453 37.0 35.0 37.0 35.0 37.0 6 36.032384824433684 37.0 35.0 37.0 35.0 37.0 7 36.21858190286497 37.0 37.0 37.0 35.0 37.0 8 36.07008826922329 37.0 37.0 37.0 35.0 37.0 9 37.98604456234797 39.0 38.0 39.0 35.0 39.0 10 37.66563765116591 39.0 37.0 39.0 35.0 39.0 11 37.62092624356775 39.0 37.0 39.0 35.0 39.0 12 37.56270873748655 39.0 37.0 39.0 35.0 39.0 13 37.57592103728219 39.0 37.0 39.0 35.0 39.0 14 38.86197942545074 40.0 38.0 41.0 35.0 41.0 15 38.921091289300975 40.0 38.0 41.0 35.0 41.0 16 38.916351625182 40.0 38.0 41.0 35.0 41.0 17 38.86370117217035 40.0 38.0 41.0 35.0 41.0 18 38.74502162444751 40.0 38.0 41.0 35.0 41.0 19 38.65846766702239 40.0 38.0 41.0 35.0 41.0 20 38.56812025007453 40.0 38.0 41.0 35.0 41.0 21 38.46980786429957 40.0 37.0 41.0 35.0 41.0 22 38.48226838510095 40.0 37.0 41.0 35.0 41.0 23 38.44845777291954 40.0 37.0 41.0 35.0 41.0 24 38.38365139921625 40.0 37.0 41.0 34.0 41.0 25 38.21999040833697 40.0 37.0 41.0 34.0 41.0 26 38.237214356386446 40.0 37.0 41.0 34.0 41.0 27 38.24285701941232 40.0 37.0 41.0 34.0 41.0 28 38.175948688923356 40.0 37.0 41.0 34.0 41.0 29 38.124527437773004 40.0 37.0 41.0 34.0 41.0 30 37.95269625104234 40.0 36.0 41.0 34.0 41.0 31 37.89027267110533 40.0 36.0 41.0 34.0 41.0 32 37.75922333452869 40.0 36.0 41.0 33.0 41.0 33 37.62036672989099 40.0 36.0 41.0 33.0 41.0 34 37.480544478096874 40.0 36.0 41.0 33.0 41.0 35 37.37176335379843 40.0 36.0 41.0 33.0 41.0 36 37.28316576726824 40.0 36.0 41.0 33.0 41.0 37 37.25639336187789 40.0 36.0 41.0 33.0 41.0 38 37.133067042268124 40.0 35.0 41.0 32.0 41.0 39 37.090863724935296 40.0 35.0 41.0 32.0 41.0 40 36.99237635611858 40.0 35.0 41.0 32.0 41.0 41 36.91819434783172 40.0 35.0 41.0 32.0 41.0 42 36.82434510976405 39.0 35.0 41.0 32.0 41.0 43 36.69481013259826 39.0 35.0 41.0 31.0 41.0 44 36.71810664028239 39.0 35.0 41.0 31.0 41.0 45 36.67949371573249 39.0 35.0 41.0 31.0 41.0 46 36.58816120906801 39.0 35.0 41.0 31.0 41.0 47 36.53700567290701 39.0 35.0 41.0 31.0 41.0 48 36.494925491788756 39.0 35.0 41.0 31.0 41.0 49 36.44749212576312 39.0 35.0 41.0 31.0 41.0 50 36.36817512129997 39.0 35.0 41.0 31.0 41.0 51 35.535247201351474 38.0 35.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 6.0 10 4.0 11 4.0 12 12.0 13 10.0 14 10.0 15 21.0 16 25.0 17 57.0 18 105.0 19 174.0 20 293.0 21 505.0 22 730.0 23 1131.0 24 1749.0 25 2719.0 26 3849.0 27 4867.0 28 5012.0 29 5117.0 30 5450.0 31 6455.0 32 8262.0 33 11581.0 34 22460.0 35 31827.0 36 32037.0 37 47165.0 38 88547.0 39 182507.0 40 208.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.65417734207241 20.23776090835641 24.379242258620614 14.728819490950567 2 34.302292925932484 24.3055765583212 24.608880497383893 16.783250018362416 3 31.788585920994077 23.616445813584733 28.132952547191415 16.46201571822978 4 28.209426617296966 25.203822839391492 28.18371923214849 18.403031311163055 5 25.423955826503235 29.04567273418564 25.66093903245179 19.869432406859335 6 26.0871631576446 33.55526655750029 25.414018517958443 14.943551766896665 7 78.188039801081 5.906865816090663 11.452316040976276 4.4527783418520555 8 79.02709428777581 5.686948857425546 10.648474191081482 4.637482663717158 9 72.4287214140358 7.9962929518559 12.953929773472572 6.621055860635729 10 36.70863379289785 29.36690703431828 19.10469170580382 14.819767466980052 11 28.552263762092196 24.039645540524777 28.282876289149755 19.125214408233276 12 26.14073821240781 21.101442637966567 31.709519509529017 21.04829964009661 13 25.023439086458904 21.82945850309569 32.880177661794505 20.2669247486509 14 21.523994279566733 25.493949043210012 31.134451784611 21.84760489261226 15 20.202332243109772 24.73936167914591 34.415923888857684 20.642382188886632 16 23.0003326838078 23.002060911380813 32.30921447736238 21.688391927449008 17 22.327836129461527 23.46933044143253 30.52676376425248 23.67606966485347 18 22.938332519626183 23.240556316455752 31.27919084385032 22.541920320067746 19 23.40776233414416 25.080902653261383 29.412489036556334 22.098845976038124 20 24.483800026787527 24.93097891130304 29.674315513866866 20.910905548042567 21 23.78840445709891 25.32155834280258 29.681444452605522 21.20859274749299 22 22.654903197653066 23.47084264055891 29.18457902536606 24.689675136421965 23 21.946545921166898 25.628966822351167 29.69246190338344 22.732025353098496 24 22.768534160578266 24.461549096785067 30.38915364375181 22.380763098884863 25 22.961663591861775 25.409913977472552 28.499552821115486 23.128869609550186 26 21.37990330566729 26.615352709644807 28.963365896021187 23.04137808866672 27 22.65058262872055 25.54665998418672 29.552907526863137 22.249849860229595 28 21.173380110692978 26.04050101317342 30.424366280551823 22.361752595581784 29 22.65727951056595 25.690534929639536 28.80544910153769 22.84673645825682 30 22.9108969069047 25.465865345148647 29.7857861923258 21.83745155562084 31 23.299748110831235 26.846503147534467 27.210943136992277 22.642805604642017 32 24.07853066091743 27.184371638057296 27.02494264444742 21.71215505657785 33 23.583609489697604 26.50755451477851 26.967047020751693 22.941788974772198 34 23.03014460944217 27.009604624736987 27.422651014685613 22.53759975113523 35 22.418136020151135 25.91218011587766 27.691390402288174 23.978293461683034 36 22.302992858099554 28.071600468349672 27.039848607264606 22.58555806628617 37 23.65511490553076 26.491136352834943 27.69787125568695 22.15587748594735 38 22.453348656951146 27.509494450229205 26.109198059200434 23.92795883361921 39 23.915645212161536 25.316373660083556 26.6211854777037 24.146795650051196 40 23.4423268856043 24.5779884295164 29.294753533145247 22.684931151734062 41 21.120453141269643 25.270791657845503 28.252200249728883 25.356554951155967 42 22.204267857991542 25.731148277605193 27.683613378209643 24.380970486193622 43 22.05499220137308 25.48617201913148 28.53109297432286 23.927742805172585 44 23.19540637111095 25.6751969099291 27.943927656393797 23.18546906256616 45 22.949782027297356 24.894254075376647 28.09298728456563 24.062976612760366 46 23.197350627130582 25.606067807008827 27.878903093959412 23.31767847190118 47 21.532203360538517 26.254369175333007 28.994041935442063 23.219385528686416 48 22.093013207979226 24.394364249884426 28.61815243831308 24.89447010382327 49 22.00984225602827 24.54882458922191 29.235777767216387 24.20555538753343 50 21.474523765289412 23.793589139817932 29.604538325606715 25.12734876928594 51 21.344690668867276 24.161485584421758 28.191280227780396 26.30254351893057 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 258.0 1 575.5 2 893.0 3 4110.5 4 7328.0 5 4674.5 6 2021.0 7 2002.0 8 1983.0 9 1946.5 10 1910.0 11 1817.5 12 1725.0 13 1690.0 14 1655.0 15 1566.0 16 1477.0 17 1496.5 18 1516.0 19 1584.0 20 1652.0 21 1656.5 22 1661.0 23 1865.5 24 2070.0 25 2644.0 26 3676.0 27 4134.0 28 4995.0 29 5856.0 30 6480.5 31 7105.0 32 7864.5 33 8624.0 34 9601.5 35 10579.0 36 11627.5 37 12676.0 38 13752.5 39 14829.0 40 16618.5 41 18408.0 42 20871.5 43 23335.0 44 25542.5 45 27750.0 46 32410.0 47 37070.0 48 39610.5 49 42151.0 50 41163.5 51 40176.0 52 35791.0 53 31406.0 54 28635.0 55 25864.0 56 24251.0 57 22638.0 58 21456.5 59 20275.0 60 19891.5 61 19508.0 62 17948.5 63 16389.0 64 14753.0 65 13117.0 66 11093.0 67 9069.0 68 7777.5 69 6486.0 70 5748.0 71 5010.0 72 4700.0 73 4390.0 74 3655.5 75 2282.5 76 1644.0 77 1300.5 78 957.0 79 763.0 80 569.0 81 458.0 82 347.0 83 263.5 84 180.0 85 108.0 86 36.0 87 24.0 88 12.0 89 10.5 90 9.0 91 8.5 92 8.0 93 7.5 94 7.0 95 3.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 462902.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.15817325660655 #Duplication Level Percentage of deduplicated Percentage of total 1 71.64602018581327 24.472971706533407 2 8.234955355182727 5.625820635655031 3 3.4115469293856906 3.4959663326100148 4 2.1248323080622544 2.9032156048010274 5 1.6263769206717311 2.7777032318425623 6 1.4126371122821062 2.8951861938026733 7 1.2291440527310702 2.938972085736081 8 1.1460397618024274 3.131729979408594 9 1.0358380600641715 3.1844102329313277 >10 8.03683198640975 43.046139551274024 >50 0.057720111331932174 1.3874959625450904 >100 0.03361720769881764 2.1256594141989194 >500 0.0038057216262812423 1.0022730047991237 >1k 6.342869377135405E-4 1.0124560638621498 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4673 1.0095009310826049 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCC 952 0.20565908118781082 No Hit GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC 949 0.20501099584793325 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCG 776 0.1676380745816609 No Hit GAATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC 774 0.16720601768840923 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGC 611 0.13199338088839538 No Hit CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGCT 564 0.12184004389698036 TruSeq Adapter, Index 15 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1261606128294974 0.0 2 0.0 0.0 0.0 0.5670746723928607 0.0 3 0.0 0.0 0.0 0.8241485238776242 0.0 4 0.0 0.0 0.0 1.241083425865518 0.0 5 0.0 0.0 0.0 2.4067729238586137 0.0 6 0.0 0.0 0.0 3.1952767540429723 0.0 7 0.0 0.0 0.0 3.9496480896604464 0.0 8 0.0 0.0 0.0 5.116201701440046 0.0 9 0.0 0.0 0.0 5.685436658299165 0.0 10 0.0 0.0 0.0 6.864087863089812 0.0 11 0.0 0.0 0.0 8.166955424690324 0.0 12 0.0 0.0 0.0 9.257899080150874 0.0 13 0.0 0.0 0.0 9.639621345338755 0.0 14 0.0 0.0 0.0 9.799266367395258 0.0 15 0.0 0.0 0.0 10.092849026359792 0.0 16 0.0 0.0 0.0 10.651282560887617 0.0 17 0.0 0.0 0.0 11.286190165520996 0.0 18 0.0 0.0 0.0 12.00923737637772 0.0 19 0.0 0.0 0.0 12.446911009241697 0.0 20 0.0 0.0 0.0 12.869030593948612 0.0 21 0.0 0.0 0.0 13.35963119623592 0.0 22 0.0 0.0 0.0 13.853256196775991 0.0 23 0.0 0.0 0.0 14.358330704987234 0.0 24 0.0 0.0 0.0 14.74955822182665 0.0 25 0.0 0.0 0.0 15.116374524197346 0.0 26 0.0 0.0 0.0 15.457267412972941 0.0 27 0.0 0.0 0.0 15.798592358641786 0.0 28 0.0 0.0 0.0 16.155255324021066 0.0 29 0.0 0.0 0.0 16.54151418658809 0.0 30 0.0 0.0 0.0 16.96709022644102 0.0 31 0.0 0.0 0.0 17.347948377842393 0.0 32 0.0 0.0 0.0 17.71692496467935 0.0 33 0.0 0.0 0.0 18.087629779089312 0.0 34 0.0 0.0 0.0 18.461358991752032 0.0 35 0.0 0.0 0.0 18.827743237229477 0.0 36 0.0 0.0 0.0 19.202768620571955 0.0 37 0.0 0.0 0.0 19.570016979835906 0.0 38 0.0 0.0 0.0 19.93575313997347 0.0 39 0.0 0.0 0.0 20.306890011276685 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGGT 40 6.7993824E-9 45.000004 28 AACCCGA 20 7.028915E-4 45.000004 24 CTAAGCG 20 7.028915E-4 45.000004 1 GCGCATA 20 7.028915E-4 45.000004 1 GCCATAG 20 7.028915E-4 45.000004 1 TCGACGT 20 7.028915E-4 45.000004 26 CTCACGT 35 1.209828E-7 45.0 45 CGAATAT 25 3.8871833E-5 45.0 14 CGTTTTT 2025 0.0 41.0 1 GTAGTAG 40 3.45226E-7 39.375004 1 AACGGGA 220 0.0 38.863636 4 TAGGGTA 105 0.0 38.57143 5 TAGCCGT 35 6.240207E-6 38.571426 44 TAGCATA 140 0.0 38.571426 30 TAAGCGG 70 0.0 38.571426 2 ATGGGCG 130 0.0 38.076927 5 CCCGATC 65 9.094947E-12 38.076927 41 AAACCGG 30 1.1388688E-4 37.499996 2 CTACCCA 60 1.546141E-10 37.499996 16 GCTACGA 30 1.1388688E-4 37.499996 10 >>END_MODULE