SRR3551985_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551985_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	707759
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6083	0.859473351804781	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	1574	0.22239208544151326	No Hit
CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT	1444	0.20402425119284956	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCC	1299	0.18353705145395538	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	1232	0.17407055226425944	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	819	0.11571735576658157	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC	775	0.1095005503285723	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTACG	20	7.031447E-4	45.0	1
CTTACGA	20	7.031447E-4	45.0	24
AATATAC	190	0.0	42.63158	16
CGAATAT	190	0.0	41.44737	14
CGTTTTT	2590	0.0	40.569496	1
TATTGCG	50	1.0804797E-9	40.500004	1
CTACGAA	210	0.0	39.642857	11
GCAAACG	40	3.455716E-7	39.375	1
CACGAAT	40	3.455716E-7	39.375	29
TACACGG	40	3.455716E-7	39.375	2
GCTACGA	210	0.0	38.57143	10
TAACGCC	35	6.244889E-6	38.571426	12
TCGTAAG	35	6.244889E-6	38.571426	1
CGTAAAT	35	6.244889E-6	38.571426	16
TACGAAT	205	0.0	38.414635	12
TAGGGAC	370	0.0	38.31081	5
AGGGTAC	215	0.0	37.67442	6
AAGCTAC	210	0.0	37.5	8
AAATCGT	30	1.1394788E-4	37.499996	12
ACCGACC	30	1.1394788E-4	37.499996	31