SRR3551983_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551983_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	321819
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1757	0.5459590639458827	No Hit
GCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGC	922	0.2864964467604461	Illumina PCR Primer Index 9 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCG	657	0.20415202334231353	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTC	565	0.17556452540092413	RNA PCR Primer, Index 17 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGC	534	0.165931781529369	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCC	528	0.16406737948971317	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	519	0.1612707764302294	No Hit
CTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGCT	432	0.13423694685521986	RNA PCR Primer, Index 17 (96% over 25bp)
CCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGC	394	0.12242906727073294	RNA PCR Primer, Index 17 (95% over 24bp)
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	373	0.11590366013193752	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	330	0.10254211218107072	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTACGA	65	0.0	45.000004	10
ACAACGA	20	7.025709E-4	45.0	13
TTGATCG	20	7.025709E-4	45.0	1
TCGTTTG	25	3.8845254E-5	45.0	1
ATAGCGG	50	2.1827873E-11	45.0	2
CAAGGTA	20	7.025709E-4	45.0	4
CGTAAGG	20	7.025709E-4	45.0	2
GTATAAG	25	3.8845254E-5	45.0	1
TCATACG	20	7.025709E-4	45.0	31
AATAGCG	25	3.8845254E-5	45.0	1
CACAACG	20	7.025709E-4	45.0	12
TATCGTG	20	7.025709E-4	45.0	1
TAAGACG	20	7.025709E-4	45.0	1
TACACGC	95	0.0	45.0	35
CTACCGG	30	2.1606138E-6	44.999996	2
ACACGCG	100	0.0	42.75	36
TTACACG	100	0.0	42.75	34
TACGAAT	70	0.0	41.785713	12
CGAATAT	70	0.0	41.785713	14
GACCTAT	70	0.0	41.785713	33