##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551979_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 390585 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.19665885786704 33.0 31.0 34.0 30.0 34.0 2 32.30851159158698 34.0 31.0 34.0 30.0 34.0 3 32.28680568890255 34.0 31.0 34.0 30.0 34.0 4 35.89155241496729 37.0 35.0 37.0 35.0 37.0 5 35.94703073594736 37.0 35.0 37.0 35.0 37.0 6 35.923622258919316 37.0 35.0 37.0 35.0 37.0 7 36.09944826350218 37.0 35.0 37.0 35.0 37.0 8 35.85030403113279 37.0 35.0 37.0 35.0 37.0 9 37.78832264423877 39.0 38.0 39.0 35.0 39.0 10 37.57908009780201 39.0 37.0 39.0 35.0 39.0 11 37.5108542314733 39.0 37.0 39.0 35.0 39.0 12 37.31437715222039 39.0 37.0 39.0 35.0 39.0 13 37.191039082402035 39.0 37.0 39.0 34.0 39.0 14 38.44847344368063 40.0 38.0 41.0 34.0 41.0 15 38.39248563052857 40.0 38.0 41.0 34.0 41.0 16 38.535069191085164 40.0 38.0 41.0 34.0 41.0 17 38.38012212450555 40.0 37.0 41.0 34.0 41.0 18 38.192908073786754 40.0 37.0 41.0 34.0 41.0 19 38.00772687123161 40.0 37.0 41.0 34.0 41.0 20 37.66492056786615 40.0 35.0 41.0 33.0 41.0 21 37.72976688812935 39.0 35.0 41.0 34.0 41.0 22 37.714576852669715 39.0 35.0 41.0 34.0 41.0 23 37.61644200366118 39.0 35.0 41.0 34.0 41.0 24 37.57753881997517 39.0 35.0 41.0 33.0 41.0 25 37.499824622041295 39.0 35.0 41.0 33.0 41.0 26 37.44154793450849 39.0 35.0 41.0 33.0 41.0 27 37.365710408745855 39.0 35.0 41.0 33.0 41.0 28 37.278405468719995 39.0 35.0 41.0 33.0 41.0 29 37.17377267432185 39.0 35.0 41.0 33.0 41.0 30 36.98485604925944 39.0 35.0 41.0 33.0 41.0 31 36.81171319943162 39.0 35.0 41.0 32.0 41.0 32 36.426450068487014 39.0 35.0 41.0 31.0 41.0 33 36.019186604708324 39.0 35.0 41.0 29.0 41.0 34 35.719968764801514 39.0 35.0 41.0 27.0 41.0 35 35.518089532368116 39.0 35.0 41.0 25.0 41.0 36 35.47906089583574 39.0 35.0 41.0 25.0 41.0 37 35.46401679531984 39.0 35.0 41.0 25.0 41.0 38 35.20885850711113 38.0 35.0 41.0 23.0 41.0 39 35.182905129485256 38.0 35.0 41.0 23.0 41.0 40 35.03270222870822 38.0 35.0 41.0 23.0 41.0 41 35.02095574586838 38.0 35.0 41.0 23.0 41.0 42 34.857032400117774 38.0 35.0 40.0 23.0 41.0 43 34.74570708040503 38.0 35.0 40.0 22.0 41.0 44 34.83493733758337 38.0 35.0 40.0 22.0 41.0 45 34.80749900789841 38.0 35.0 40.0 23.0 41.0 46 34.76590754893301 38.0 35.0 40.0 23.0 41.0 47 34.60901468310355 37.0 35.0 40.0 22.0 41.0 48 34.64160426027625 37.0 35.0 40.0 23.0 41.0 49 34.67369202606347 37.0 35.0 40.0 23.0 41.0 50 34.51860414506446 37.0 34.0 40.0 22.0 41.0 51 33.752248550251544 36.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 5.0 10 3.0 11 10.0 12 5.0 13 8.0 14 12.0 15 16.0 16 34.0 17 69.0 18 123.0 19 264.0 20 525.0 21 1119.0 22 1846.0 23 2402.0 24 3344.0 25 4807.0 26 6701.0 27 7594.0 28 7232.0 29 6666.0 30 6888.0 31 7747.0 32 9578.0 33 12472.0 34 23574.0 35 35530.0 36 28192.0 37 36879.0 38 67205.0 39 119603.0 40 128.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.77957422840099 15.928415069703137 19.592406262401273 17.699604439494603 2 36.036970185747016 29.062303979927545 20.06682284265909 14.833902991666347 3 26.95776847549189 29.106084463049015 29.33369177003725 14.602455291421842 4 24.96742066387598 20.888923025717833 38.0145166865087 16.129139623897487 5 28.759424965116427 23.791236222589195 28.350295070215193 19.09904374207919 6 21.813689721827515 35.57458683769218 29.66575777359602 12.945965666884288 7 65.46692781340809 5.619007386356363 24.08515431980235 4.828910480433196 8 64.59592662288618 12.331246719664094 17.449466825402922 5.623359832046802 9 59.87198689145769 6.595491378317139 18.699130790993 14.833390939232178 10 38.337877798686584 20.99927032528131 25.343779202990387 15.31907267304172 11 32.590601277570826 20.498995097097943 29.4911478935443 17.419255731786933 12 26.538653558124352 18.929042333934994 33.716348554091944 20.815955553848713 13 25.190419498956697 21.059948538730367 37.495039492043986 16.254592470268957 14 19.84331195514421 28.1052779804652 32.1545886298757 19.896821434514894 15 16.516763316563615 21.464725987941165 41.70641473686906 20.312095958626163 16 19.311289476042344 21.171319943162178 35.414058399580114 24.103332181215357 17 20.137998131008615 21.92506112625933 35.57893928338262 22.35800145934944 18 20.547384052126937 21.56252800286749 34.86001766580898 23.03007027919659 19 21.21663658358616 23.775874649564116 32.07342831905987 22.934060447789854 20 24.290231319687138 23.493989784553936 35.045124620761165 17.17065427499776 21 21.824954875379238 27.2857380595773 32.7142619404227 18.175045124620762 22 19.319994367423224 21.64266420881498 35.41149813740927 23.62584328635252 23 20.407337711381647 26.00304671198331 33.97928747903785 19.610328097597193 24 22.623244620249114 22.415095305759312 32.425464367551236 22.53619570644034 25 19.26622886183545 28.079931384973822 31.33888910224407 21.314950650946656 26 17.907497727767325 23.950996582050003 35.79886580385831 22.34263988632436 27 21.6923332949294 23.65554232753434 32.6226045547064 22.029519822829858 28 16.624038301522077 26.026601123955096 35.70157584136616 21.647784733156676 29 20.969827310316578 24.355261978826633 32.81872063699323 21.856190073863562 30 19.65257242341616 25.684294071712944 32.97310444589526 21.69002905897564 31 21.983947156188794 24.67043025205781 29.06076782262504 24.28485476912836 32 25.426731697325806 27.445242392821022 27.899688928146244 19.228336981706924 33 23.05772111064173 23.087164125606463 29.080225815123466 24.77488894862834 34 21.79960827988786 26.44546001510555 28.614258100029446 23.14067360497715 35 21.303941523612018 25.690950753357143 28.05842518273871 24.946682540292127 36 21.573025077767962 30.287901481111668 27.312620812371186 20.826452628749184 37 21.985227287274217 26.25881690285085 29.095075335714377 22.660880474160557 38 21.960136717999923 27.664912887079634 27.572231396495 22.80271899842544 39 24.982014158249804 24.064160170001408 28.059961340041223 22.893864331707565 40 20.63033654646236 24.77540100106251 31.710383143233866 22.883879309241266 41 21.24940793937299 25.764686303877514 26.646184569299898 26.339721187449594 42 21.482903849354173 26.89145768526697 29.679327163101505 21.94631130227735 43 24.95077895976548 24.477130458158918 26.82002637070036 23.752064211375245 44 22.064851440787535 23.246668458850188 30.10893915536951 24.579540944992768 45 20.71226493592944 23.530857559814127 29.162922283241805 26.59395522101463 46 25.403433311571106 26.032745753165127 27.336431250560057 21.227389684703713 47 18.39215535670853 25.648962453755264 34.51847869221808 21.440403497318126 48 21.764020635713095 24.548049720291356 28.66341513370969 25.024514510285854 49 20.974691808441186 22.152668433247563 33.951892673809795 22.920747084501453 50 21.994444231089265 22.376179320762446 31.185785424427458 24.443591023720828 51 20.96291460245529 22.4852464892405 28.435039748070203 28.116799160234006 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 434.0 1 762.5 2 1091.0 3 6830.5 4 12570.0 5 8004.0 6 3438.0 7 3397.0 8 3356.0 9 3316.0 10 3276.0 11 3140.5 12 3005.0 13 2981.5 14 2958.0 15 2855.0 16 2752.0 17 2633.5 18 2515.0 19 2495.0 20 2475.0 21 2304.5 22 2134.0 23 2074.0 24 2014.0 25 2358.0 26 2862.5 27 3023.0 28 3141.5 29 3260.0 30 3981.0 31 4702.0 32 5189.0 33 5676.0 34 6645.5 35 7615.0 36 7792.5 37 7970.0 38 8672.0 39 9374.0 40 10738.0 41 12102.0 42 14278.0 43 16454.0 44 18153.0 45 19852.0 46 35559.0 47 51266.0 48 42126.0 49 32986.0 50 33377.0 51 33768.0 52 30084.0 53 26400.0 54 23821.5 55 21243.0 56 19407.5 57 17572.0 58 16672.0 59 15772.0 60 14761.5 61 13751.0 62 12640.0 63 11529.0 64 10504.5 65 9480.0 66 7932.5 67 6385.0 68 5369.5 69 4354.0 70 3903.5 71 3453.0 72 3122.5 73 2792.0 74 2423.5 75 1724.0 76 1393.0 77 1138.5 78 884.0 79 642.0 80 400.0 81 314.5 82 229.0 83 150.5 84 72.0 85 58.0 86 44.0 87 25.5 88 7.0 89 4.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 390585.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.436557527310015 #Duplication Level Percentage of deduplicated Percentage of total 1 76.98995172444562 25.742789498592465 2 8.604322984679232 5.753978809215661 3 2.8955245161290737 2.9044911616585884 4 1.5682262107451292 2.097443436456597 5 1.072669641314615 1.7933190084807562 6 0.8061791396548621 1.6173513108232254 7 0.6185689035993666 1.4477970310863713 8 0.5877960359642607 1.5723100776675034 9 0.4949274202133981 1.489380224202758 >10 6.212206483822748 41.013401255979055 >50 0.10742446933557862 2.4440344127911873 >100 0.03222734080067358 2.1066519592093678 >500 0.0023019529143338277 0.4985050245699429 >1k 0.0046039058286676555 2.2790633727507994 >5k 0.0030692705524451034 7.239483416515738 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7798 1.9964924408259408 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCG 7391 1.8922897704724964 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGC 7039 1.8021685420587068 No Hit GAATCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTC 5989 1.5333410141198458 No Hit GCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC 2157 0.5522485502515457 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACAGTCAGT 1684 0.431148149570516 No Hit GAATGACTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCT 1460 0.37379827694355905 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACAGTCAGTCGTA 1405 0.3597168350039044 No Hit GAACTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCT 1141 0.2921259136935622 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTC 1036 0.26524316089967614 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCC 729 0.18664311225469488 No Hit CTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGCT 633 0.16206459541457044 No Hit CCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC 581 0.14875123212616972 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATG 462 0.1182841122930988 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 444 0.11367564038557548 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.16923332949294007 0.0 2 0.0 0.0 0.0 1.0458670967907113 0.0 3 0.0 0.0 0.0 1.3303122239717347 0.0 4 0.0 0.0 0.0 2.0000768078651254 0.0 5 0.0 0.0 0.0 4.503501158518632 0.0 6 0.0 0.0 0.0 5.143822727447291 0.0 7 0.0 0.0 0.0 6.101872831777974 0.0 8 0.0 0.0 0.0 7.197409014683103 0.0 9 0.0 0.0 0.0 7.565830741067885 0.0 10 0.0 0.0 0.0 10.259482571015273 0.0 11 0.0 0.0 0.0 11.479191469206446 0.0 12 0.0 0.0 0.0 14.283958677368563 0.0 13 0.0 0.0 0.0 14.80369189805036 0.0 14 0.0 0.0 0.0 15.046916804280759 0.0 15 0.0 0.0 0.0 15.746124403138882 0.0 16 0.0 0.0 0.0 16.4670942304492 0.0 17 0.0 0.0 0.0 17.20265755213334 0.0 18 2.560262170846295E-4 0.0 0.0 17.964079521743027 0.0 19 2.560262170846295E-4 0.0 0.0 18.87527682834722 0.0 20 2.560262170846295E-4 0.0 0.0 19.41651625126413 0.0 21 2.560262170846295E-4 0.0 0.0 19.956475543095614 0.0 22 2.560262170846295E-4 0.0 0.0 20.486449812460798 0.0 23 2.560262170846295E-4 0.0 0.0 21.00157456123507 0.0 24 2.560262170846295E-4 0.0 0.0 21.392270568506216 0.0 25 2.560262170846295E-4 0.0 0.0 21.768885133837706 0.0 26 2.560262170846295E-4 0.0 0.0 22.13321044074913 0.0 27 2.560262170846295E-4 0.0 0.0 22.51468950420523 0.0 28 2.560262170846295E-4 0.0 0.0 22.88464738789252 0.0 29 2.560262170846295E-4 0.0 0.0 23.24794858993561 0.0 30 2.560262170846295E-4 0.0 0.0 23.64555730506804 0.0 31 5.12052434169259E-4 0.0 0.0 24.020891739314106 0.0 32 5.12052434169259E-4 0.0 0.0 24.399298488165186 0.0 33 5.12052434169259E-4 0.0 0.0 24.772840738891663 0.0 34 5.12052434169259E-4 0.0 0.0 25.13716604580309 0.0 35 5.12052434169259E-4 0.0 0.0 25.52094934521295 0.0 36 5.12052434169259E-4 0.0 0.0 25.883994521038954 0.0 37 5.12052434169259E-4 0.0 0.0 26.22450938976151 0.0 38 5.12052434169259E-4 0.0 0.0 26.565792337135324 0.0 39 5.12052434169259E-4 0.0 0.0 26.958024501708977 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAAGTTA 20 7.02756E-4 45.000004 42 TAGGTCG 20 7.02756E-4 45.000004 2 AACTTCG 20 7.02756E-4 45.000004 11 TTAGACG 20 7.02756E-4 45.000004 1 CGTCTCA 20 7.02756E-4 45.000004 31 CCCGTCG 35 1.2091732E-7 45.000004 40 ATATCAG 20 7.02756E-4 45.000004 1 CGTGTCG 20 7.02756E-4 45.000004 29 CGTCGAA 20 7.02756E-4 45.000004 42 CAAGACG 20 7.02756E-4 45.000004 38 CGATGCG 20 7.02756E-4 45.000004 10 CCTGCGT 20 7.02756E-4 45.000004 45 GCGTCGC 20 7.02756E-4 45.000004 26 TGGCTAG 20 7.02756E-4 45.000004 1 AGTCGAT 20 7.02756E-4 45.000004 20 AAGTCGA 20 7.02756E-4 45.000004 19 CATGCGG 25 3.8860606E-5 45.0 2 ATAGCGG 25 3.8860606E-5 45.0 2 CCGTCGA 25 3.8860606E-5 45.0 41 ACCTATG 25 3.8860606E-5 45.0 34 >>END_MODULE