SRR3551978_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551978_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	446351
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2609	0.5845175657722286	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCG	1429	0.3201516295471501	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGC	1298	0.2908025298475863	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTC	1233	0.2762399994623066	No Hit
GCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC	1005	0.22515912364932533	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	964	0.21597352756014884	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCC	664	0.1487618488588577	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	522	0.11694832094024658	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	509	0.11403581486319062	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCGG	20	7.028645E-4	45.0	2
GGCGTAT	20	7.028645E-4	45.0	19
TGAGTAG	20	7.028645E-4	45.0	1
CGGTCTA	25	3.8869584E-5	45.0	31
TAGTGCG	55	1.8189894E-12	45.0	1
CTTACGG	40	6.7993824E-9	45.0	2
AAATGCG	20	7.028645E-4	45.0	1
AGCGTTG	30	2.1625074E-6	44.999996	1
AGGGTAC	75	0.0	42.0	6
CCGATGA	165	0.0	40.909092	18
TTGCGAG	55	6.002665E-11	40.909092	1
TAGGGTC	75	0.0	39.0	5
CGTTTTT	1235	0.0	38.805668	1
CAAACGC	35	6.239705E-6	38.571426	34
TTGTGCG	35	6.239705E-6	38.571426	1
CCGTCGA	35	6.239705E-6	38.571426	41
CGTAAGG	100	0.0	38.25	2
TTACGGG	100	0.0	38.25	3
AACGGGC	65	9.094947E-12	38.07692	4
CTACGAA	125	0.0	37.800003	11