##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551976_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 733355 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.135530541143105 33.0 31.0 34.0 30.0 34.0 2 32.23934247397236 34.0 31.0 34.0 30.0 34.0 3 32.230394556524466 34.0 31.0 34.0 30.0 34.0 4 35.86609077459075 37.0 35.0 37.0 35.0 37.0 5 35.87565912825303 37.0 35.0 37.0 35.0 37.0 6 35.841749221045745 37.0 35.0 37.0 35.0 37.0 7 36.00981925534018 37.0 35.0 37.0 35.0 37.0 8 35.74106537761384 37.0 35.0 37.0 35.0 37.0 9 37.628522339112706 39.0 37.0 39.0 35.0 39.0 10 37.40395988300346 39.0 37.0 39.0 34.0 39.0 11 37.363780161040694 39.0 37.0 39.0 34.0 39.0 12 37.284857947378825 39.0 37.0 39.0 34.0 39.0 13 37.231317711067625 39.0 37.0 39.0 34.0 39.0 14 38.561554772245366 40.0 38.0 41.0 34.0 41.0 15 38.50053793865181 40.0 38.0 41.0 34.0 41.0 16 38.5959978455182 40.0 38.0 41.0 34.0 41.0 17 38.44122014576842 40.0 38.0 41.0 34.0 41.0 18 38.29220909382223 40.0 38.0 41.0 34.0 41.0 19 38.150130564324236 40.0 37.0 41.0 34.0 41.0 20 37.77659796415106 40.0 35.0 41.0 33.0 41.0 21 37.85744966625986 40.0 35.0 41.0 33.0 41.0 22 37.811643746889295 40.0 35.0 41.0 33.0 41.0 23 37.68071261530909 40.0 35.0 41.0 33.0 41.0 24 37.67045700922473 40.0 35.0 41.0 33.0 41.0 25 37.65349251044856 40.0 35.0 41.0 33.0 41.0 26 37.57638115237504 40.0 35.0 41.0 33.0 41.0 27 37.48211711926693 40.0 35.0 41.0 33.0 41.0 28 37.367505505519155 40.0 35.0 41.0 33.0 41.0 29 37.292098642540104 40.0 35.0 41.0 33.0 41.0 30 37.17619706690484 40.0 35.0 41.0 32.0 41.0 31 37.06267360282537 40.0 35.0 41.0 32.0 41.0 32 36.61946806117092 40.0 35.0 41.0 30.0 41.0 33 36.364318781490546 39.0 35.0 41.0 30.0 41.0 34 36.16268246619986 39.0 35.0 41.0 28.0 41.0 35 35.85218618540816 39.0 35.0 41.0 26.0 41.0 36 35.80853065704877 39.0 35.0 41.0 25.0 41.0 37 35.6969216818594 39.0 35.0 41.0 25.0 41.0 38 35.67341055832441 39.0 35.0 41.0 24.0 41.0 39 35.51459252340272 39.0 35.0 41.0 24.0 41.0 40 35.453842954639974 39.0 35.0 41.0 24.0 41.0 41 35.36944453913862 39.0 35.0 41.0 23.0 41.0 42 35.13853863408581 39.0 35.0 41.0 23.0 41.0 43 35.058742355339504 39.0 35.0 41.0 22.0 41.0 44 35.229440039271566 39.0 35.0 41.0 23.0 41.0 45 35.22100074315986 39.0 35.0 41.0 23.0 41.0 46 35.12688125123576 38.0 35.0 41.0 23.0 41.0 47 34.98908441341506 38.0 35.0 41.0 23.0 41.0 48 34.998251869831115 38.0 35.0 40.0 23.0 41.0 49 34.96206884796585 38.0 35.0 40.0 23.0 41.0 50 34.83696163522441 38.0 35.0 40.0 23.0 41.0 51 34.163612438723405 37.0 34.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 12.0 10 5.0 11 12.0 12 13.0 13 9.0 14 24.0 15 40.0 16 66.0 17 121.0 18 236.0 19 604.0 20 1449.0 21 2931.0 22 4490.0 23 6017.0 24 7384.0 25 8916.0 26 11143.0 27 12615.0 28 12220.0 29 11354.0 30 11865.0 31 13476.0 32 16808.0 33 21804.0 34 35808.0 35 51582.0 36 52927.0 37 73159.0 38 129183.0 39 246785.0 40 292.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.729012551901874 16.793776547511097 20.296173067613914 17.181037832973118 2 33.3138793626552 31.41507182742328 20.62711783515487 14.643930974766656 3 27.75531632019963 30.38542043076 27.88458522816371 13.974678020876654 4 24.425687422871597 21.487410599232295 37.46725664923537 16.619645328660745 5 29.77862017713113 25.293207246149546 26.492217275398684 18.435955301320643 6 22.478199507741817 37.59529832073144 26.69321133693777 13.23329083458898 7 68.72537856836048 5.3973859863231315 21.89430766818253 3.9829277771338574 8 68.2703465579426 12.421405731194305 14.752745941597182 4.555501769265908 9 62.97713931179306 7.099699327065337 15.41586271314711 14.50729864799449 10 37.97901425639697 24.693361332506086 22.047030428646426 15.280593982450519 11 30.58968712288046 20.921381868262984 29.789392586128137 18.69953842272842 12 23.848886282905276 19.22643194632886 33.538599995909216 23.386081774856653 13 24.952444586864477 20.15122280478077 37.10890360057544 17.787429007779316 14 19.91859331428844 28.04235329410722 31.4280259901412 20.61102740146314 15 18.034785335887804 22.536970498598905 37.449393540645396 21.978850624867903 16 19.868003899884776 22.79973546236134 31.65356478104056 25.678695856713325 17 19.951865058532363 25.387295375363912 33.02070620640754 21.64013335969619 18 20.02781735994164 23.19026937840473 32.311772606718435 24.470140654935197 19 20.955062691329573 23.98510953085477 30.119655555631308 24.940172222184344 20 24.863810841952397 23.368900464304467 33.24419960319354 18.523089090549597 21 22.344567092335907 28.283709799483198 30.870860633663096 18.5008624745178 22 20.7330692502267 21.075195505587335 34.033449011733744 24.158286232452223 23 23.511396254201582 24.934036039844276 31.5778851988464 19.976682507107746 24 21.873308288618745 25.177301579726052 30.400829066413948 22.548561065241255 25 20.55866531216123 30.326649439902916 28.734378302459245 20.38030694547661 26 19.772279455379728 23.533350151018265 33.36610509234955 23.32826530125246 27 24.96021708449523 24.352871392436132 28.99346155681764 21.693449966250995 28 19.21429594125628 26.51267121653224 32.25381977350669 22.019213068704786 29 21.744448459477333 22.76864547183833 31.1118080602164 24.375098008467933 30 20.023726571714924 29.465538518180146 29.676486831070903 20.83424807903403 31 22.452563901521092 25.206209816528148 26.38831125444021 25.952915027510553 32 24.26737391849786 26.06350266923932 26.58889623715663 23.08022717510619 33 22.99650237606616 24.074015994981966 26.21527091245031 26.714210716501558 34 22.720646889978248 24.445323206359813 26.560942517607433 26.273087386054506 35 23.11949874208262 26.99333883317084 26.61834991238895 23.268812512357588 36 20.463349946478854 29.90107110471736 27.5303229677305 22.105255981073284 37 20.774931649746712 27.40187221741176 28.684743405308478 23.13845272753305 38 20.269173865317615 27.11142625331524 26.22195253322061 26.397447348146528 39 23.794478799490015 24.601454957012635 27.61309324951763 23.990972993979724 40 20.269992022962956 26.00554983602757 29.322633649460357 24.401824491549114 41 20.910745818873533 26.06486626531489 29.016506330494778 24.0078815853168 42 20.64239011120126 26.427446461809083 30.645049123548624 22.285114303441034 43 22.272432859938228 24.416824048380388 28.8389661214555 24.471776970225882 44 22.182844597773247 24.048244029153683 29.554172263092227 24.21473910998084 45 21.156602191298894 23.67734589659851 29.03873294652658 26.12731896557602 46 24.5069577489756 25.88555338137737 27.616502239706552 21.99098662994048 47 19.84605000306809 25.250253969769076 33.156656735141915 21.74703929202092 48 21.55095417635388 25.47156561283417 28.76165022397065 24.215829986841296 49 20.32071779697418 23.890612322817734 33.16852002099938 22.620149859208706 50 20.76034117173811 23.261040014726838 31.34539206796163 24.633226745573424 51 21.067832086779255 23.064682179844688 29.49949206046185 26.36799367291421 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 474.0 1 985.0 2 1496.0 3 11423.5 4 21351.0 5 13564.0 6 5777.0 7 5463.5 8 5150.0 9 5030.0 10 4910.0 11 4769.0 12 4628.0 13 4378.0 14 4128.0 15 3894.0 16 3660.0 17 3487.0 18 3314.0 19 3146.5 20 2979.0 21 3016.5 22 3054.0 23 3134.5 24 3215.0 25 3786.5 26 5128.5 27 5899.0 28 7083.0 29 8267.0 30 9555.5 31 10844.0 32 12029.5 33 13215.0 34 14271.0 35 15327.0 36 16796.5 37 18266.0 38 19436.0 39 20606.0 40 23287.0 41 25968.0 42 28494.5 43 31021.0 44 33867.5 45 36714.0 46 65220.5 47 93727.0 48 74857.5 49 55988.0 50 55696.5 51 55405.0 52 50229.0 53 45053.0 54 42718.5 55 40384.0 56 38159.0 57 35934.0 58 34041.0 59 32148.0 60 30821.5 61 29495.0 62 27500.0 63 25505.0 64 23142.0 65 20779.0 66 17531.5 67 14284.0 68 12073.5 69 9863.0 70 8508.5 71 7154.0 72 6271.0 73 5388.0 74 4497.5 75 2763.5 76 1920.0 77 1560.5 78 1201.0 79 832.5 80 464.0 81 371.0 82 278.0 83 178.5 84 79.0 85 64.5 86 50.0 87 34.5 88 19.0 89 12.5 90 6.0 91 3.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 733355.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.40426238592533 #Duplication Level Percentage of deduplicated Percentage of total 1 71.992854835684 21.888896483359694 2 7.551211928282815 4.591780575984798 3 3.153592362130644 2.8764794890941046 4 2.093323701663854 2.5458385233625718 5 1.6931337538955225 2.5739241453953094 6 1.4437694419272797 2.6338046962282804 7 1.2840218138053863 2.732781529533351 8 1.1670542902755967 2.8386739888127286 9 1.0545709606198588 2.8857106972137165 >10 8.445361168347567 40.44908077507782 >50 0.06733117822270362 1.4512816275758438 >100 0.04609248440982041 2.822600563419157 >500 0.002711322612342377 0.5179713845448901 >1k 0.00316320971439944 2.1703962763012274 >5k 0.0 0.0 >10k+ 0.0018075484082282515 7.02077924409652 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14536 1.982123255449271 No Hit GAATCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTC 13617 1.8568087761043424 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCG 12649 1.7248126759891185 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGC 10298 1.4042312386224953 No Hit GAACTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCT 3419 0.46621349823755204 No Hit GCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGC 2949 0.40212448268573886 No Hit GAATGACTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCT 2536 0.3458079647646774 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAACCGATT 1972 0.26890114610250154 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTC 1885 0.2570378602450382 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAACCGATTCGTA 1725 0.2352203230359103 No Hit GAATGCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTT 1311 0.17876744550729184 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCC 895 0.12204184876355925 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.727192151140989E-4 0.0 0.0 0.07090699592966572 0.0 2 2.727192151140989E-4 0.0 0.0 0.59848231756789 0.0 3 2.727192151140989E-4 0.0 0.0 0.7878858124646317 0.0 4 2.727192151140989E-4 0.0 0.0 1.4744564365143757 0.0 5 2.727192151140989E-4 0.0 0.0 3.9496560328899375 0.0 6 2.727192151140989E-4 0.0 0.0 4.704133741503092 0.0 7 2.727192151140989E-4 0.0 0.0 5.494201307688637 0.0 8 4.0907882267114833E-4 0.0 0.0 6.346312495312638 0.0 9 4.0907882267114833E-4 0.0 0.0 6.6983930020249405 0.0 10 4.0907882267114833E-4 0.0 0.0 9.001915852486176 0.0 11 4.0907882267114833E-4 0.0 0.0 9.671986964021517 0.0 12 4.0907882267114833E-4 0.0 0.0 11.64292873165111 0.0 13 4.0907882267114833E-4 0.0 0.0 11.962146572942164 0.0 14 4.0907882267114833E-4 0.0 0.0 12.125778102010623 0.0 15 4.0907882267114833E-4 0.0 0.0 12.536902318795127 0.0 16 4.0907882267114833E-4 0.0 0.0 12.87084699770234 0.0 17 4.0907882267114833E-4 0.0 0.0 13.242972366725528 0.0 18 4.0907882267114833E-4 0.0 0.0 13.634597159629374 0.0 19 4.0907882267114833E-4 0.0 0.0 14.180308309072686 0.0 20 4.0907882267114833E-4 0.0 0.0 14.469254317486074 0.0 21 4.0907882267114833E-4 0.0 0.0 14.729837527527597 0.0 22 4.0907882267114833E-4 0.0 0.0 15.043055546086139 0.0 23 4.0907882267114833E-4 0.0 0.0 15.330774318031512 0.0 24 4.0907882267114833E-4 0.0 0.0 15.576494330849316 0.0 25 4.0907882267114833E-4 0.0 0.0 15.796578737446394 0.0 26 4.0907882267114833E-4 0.0 0.0 16.00289082368021 0.0 27 4.0907882267114833E-4 0.0 0.0 16.242065575335275 0.0 28 5.454384302281978E-4 0.0 0.0 16.454241124694043 0.0 29 5.454384302281978E-4 0.0 0.0 16.679370836770733 0.0 30 5.454384302281978E-4 0.0 0.0 16.944317554254077 0.0 31 5.454384302281978E-4 0.0 0.0 17.18131055218823 0.0 32 5.454384302281978E-4 0.0 0.0 17.42212161913398 0.0 33 5.454384302281978E-4 0.0 0.0 17.648887646501354 0.0 34 5.454384302281978E-4 0.0 0.0 17.87456279700827 0.0 35 5.454384302281978E-4 0.0 0.0 18.108692243183725 0.0 36 5.454384302281978E-4 0.0 0.0 18.348548792876574 0.0 37 5.454384302281978E-4 0.0 0.0 18.5830873178747 0.0 38 5.454384302281978E-4 0.0 0.0 18.823080227175105 0.0 39 6.817980377852472E-4 0.0 0.0 19.063891294120854 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGTCG 25 3.889419E-5 45.000004 1 TATAGCG 30 2.1644228E-6 45.000004 1 TAGTGCG 25 3.889419E-5 45.000004 1 CGTTTTT 5510 0.0 43.039925 1 TACGGCT 1095 0.0 42.534245 7 CGATGAA 1950 0.0 41.884613 19 TACGGGT 65 0.0 41.53846 4 GATGAAT 2150 0.0 41.23256 20 CCGATGA 1885 0.0 40.941647 18 CGACGGT 55 6.002665E-11 40.90909 28 ACGGCTG 1165 0.0 40.55794 8 ATGAATG 2195 0.0 40.28474 21 CGTATGG 45 1.9266736E-8 40.0 2 TGAATGA 2200 0.0 39.784092 22 TGATACC 1430 0.0 39.65035 4 ACCGATG 1940 0.0 39.43299 17 CGCATCG 40 3.4559343E-7 39.375 21 TCTCGAC 40 3.4559343E-7 39.375 17 CTCGACC 40 3.4559343E-7 39.375 18 GACACGA 75 0.0 39.000004 25 >>END_MODULE