SRR3551971_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551971_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	345941
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCG	3275	0.9466932222546619	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTC	2673	0.7726751093394538	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGC	2553	0.737987113409512	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1851	0.5350623372193524	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	1014	0.29311356560800833	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTCAGGT	672	0.19425277720767414	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCT	646	0.18673704475618674	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	544	0.1572522482157362	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCC	534	0.15436158188824106	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTA	462	0.13354878433027598	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCT	450	0.1300799847372818	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTC	446	0.12892371820628373	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	388	0.11215785350681186	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	355	0.10261865462607785	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	346	0.10001705493133221	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	346	0.10001705493133221	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGAATG	35	1.2086275E-7	45.000004	44
ACACGTT	20	7.026443E-4	45.0	24
GTCGAAT	40	6.7921064E-9	45.0	43
GCGAACA	20	7.026443E-4	45.0	33
CGCATGG	40	6.7921064E-9	45.0	2
AACGGAA	20	7.026443E-4	45.0	35
TACGCCG	20	7.026443E-4	45.0	29
CGGTCGA	20	7.026443E-4	45.0	41
ATACGCC	20	7.026443E-4	45.0	28
TCGACAG	20	7.026443E-4	45.0	1
CGGGTAT	25	3.885134E-5	44.999996	6
CGGGTAC	25	3.885134E-5	44.999996	6
GCCGATA	25	3.885134E-5	44.999996	9
GGCGAAC	25	3.885134E-5	44.999996	32
AGTACGG	25	3.885134E-5	44.999996	2
TACGGCT	315	0.0	39.999996	7
GATGAAT	440	0.0	39.886364	20
GGCGATA	85	0.0	39.705883	8
CGTTTTT	960	0.0	39.60937	1
ATAGGGC	125	0.0	39.6	4