SRR3551970_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551970_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	382733
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2724	0.7117233162544123	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCC	705	0.18420151907465518	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGC	641	0.16747967904518293	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGC	557	0.14553226400650063	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	511	0.13351344148531744	No Hit
CTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGCT	497	0.12985553897887037	Illumina Single End Adapter 2 (95% over 21bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	495	0.1293329814779494	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	465	0.12149461896413427	No Hit
ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTGC	416	0.10869196019156958	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	30	2.1616925E-6	45.000004	21
TAACGCC	30	2.1616925E-6	45.000004	12
CATCGTT	30	2.1616925E-6	45.000004	36
ATAACGC	30	2.1616925E-6	45.000004	11
TAGTGCG	30	2.1616925E-6	45.000004	1
TCACGAC	25	3.885913E-5	45.0	25
CTACGAA	55	1.8189894E-12	45.0	11
TATAGCG	20	7.027384E-4	45.0	1
GATAGCG	20	7.027384E-4	45.0	1
CGAATAT	60	3.6379788E-12	41.250004	14
TATTAGT	55	6.002665E-11	40.909092	30
CGTTTTT	1030	0.0	40.41262	1
GCGTTTA	45	1.9224899E-8	40.0	32
GCGAATG	40	3.4501682E-7	39.375	1
TCGACGG	40	3.4501682E-7	39.375	2
AACAGCG	40	3.4501682E-7	39.375	1
TACGTAG	40	3.4501682E-7	39.375	1
TAGGGCA	115	0.0	39.130436	5
TAGGGCG	110	0.0	38.863636	5
TCGTTTA	35	6.237371E-6	38.57143	38