SRR3551969_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551969_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	718074
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10206	1.4213019828040008	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCG	3190	0.44424390800948094	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTC	2884	0.4016299155797314	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGC	2531	0.3524706367310333	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC	1407	0.19594080832894661	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	981	0.13661544631890307	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCC	969	0.13494430936087368	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	914	0.12728493163657228	No Hit
CTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGCT	811	0.11294100608015331	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATG	20	7.031516E-4	45.0	1
ATCGTTC	20	7.031516E-4	45.0	10
TATAGCG	20	7.031516E-4	45.0	1
CGATCTA	20	7.031516E-4	45.0	10
TTAAGCG	30	2.164359E-6	44.999996	1
ATACCGG	25	3.889339E-5	44.999996	2
CGTTTTT	4325	0.0	41.618496	1
CGATGAA	495	0.0	40.000004	19
CGCATCG	45	1.9264917E-8	40.0	21
CGAATAT	120	0.0	39.374996	14
TACGGCT	355	0.0	39.295776	7
CGGGATA	140	0.0	38.571426	6
CATCGTT	35	6.2450144E-6	38.571426	36
GTTAGCG	65	9.094947E-12	38.076927	1
GTACGAG	65	9.094947E-12	38.076927	1
TACGAAT	125	0.0	37.8	12
TGCCACG	30	1.1394954E-4	37.499996	1
ATAGGGC	205	0.0	37.317074	4
TAGGGAT	310	0.0	36.29032	5
AAGCGTG	25	0.0021065837	35.999996	1