SRR3551967_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551967_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	369788
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1906	0.5154304628598008	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCG	1795	0.4854132638160243	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGC	1604	0.4337620474434	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTC	1482	0.400770171016907	No Hit
GCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTCTGC	1289	0.3485781042110615	RNA PCR Primer, Index 40 (96% over 27bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCC	732	0.1979512585589581	No Hit
CTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTCTGCT	559	0.15116769608532457	Illumina PCR Primer Index 8 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTCTGC	431	0.11655326835916795	Illumina PCR Primer Index 8 (95% over 23bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	424	0.11466029184289378	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	406	0.10979263794390298	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	401	0.10844051186085	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	393	0.10627711012796522	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCT	389	0.10519540926152281	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	372	0.10059818057914265	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	35	1.2089367E-7	45.000004	28
CTACGAA	55	1.8189894E-12	45.000004	11
GACGGTC	35	1.2089367E-7	45.000004	29
CGGTCTA	35	1.2089367E-7	45.000004	31
ACCGAGT	20	7.027074E-4	45.0	19
ATTCGCG	20	7.027074E-4	45.0	1
AGATTCG	20	7.027074E-4	45.0	1
CGAATAT	50	2.1827873E-11	45.0	14
ATACCGG	20	7.027074E-4	45.0	2
TACGTAG	25	3.885656E-5	45.0	1
AAGTCGA	20	7.027074E-4	45.0	41
TACGCGG	30	2.1614942E-6	44.999996	2
TTGACGG	30	2.1614942E-6	44.999996	2
CGTTTTT	905	0.0	41.270714	1
CACAACG	60	3.6379788E-12	41.249996	12
AACGGGC	85	0.0	39.705883	4
GTTAGCG	40	3.4497498E-7	39.375	1
AAGCGCG	40	3.4497498E-7	39.375	1
TAACGGG	80	0.0	39.375	3
CAGATAC	40	3.4497498E-7	39.375	45