SRR3551966_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551966_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	469658
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCG	2350	0.5003640947242461	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2158	0.4594832835808184	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCGTCTTC	1840	0.3917744401245161	No Hit
GCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCGTCTTCTGC	1677	0.3570683348308769	RNA PCR Primer, Index 23 (96% over 25bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGC	1615	0.3438672395658117	No Hit
CCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCGTCTTCTGC	1025	0.21824391365632012	RNA PCR Primer, Index 30 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCGTCTTCTGCT	973	0.2071720273049751	RNA PCR Primer, Index 30 (95% over 24bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCC	843	0.17949231142661257	No Hit
TCTGTCTCTTATACACATCTGACGCCGTGGATATCGTATGCCGTCTTCTGC	617	0.1313721899765361	RNA PCR Primer, Index 23 (96% over 25bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	609	0.12966882284555994	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	562	0.11966154095107505	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	485	0.10326663231542953	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	30	2.1627493E-6	45.000004	1
TCGTTTA	20	7.02902E-4	45.000004	38
TAAGTCG	20	7.02902E-4	45.000004	2
GCGATAT	20	7.02902E-4	45.000004	9
TCGACGG	40	6.7993824E-9	45.000004	2
TAATGCG	40	6.7993824E-9	45.000004	1
CGCACGG	25	3.8872706E-5	45.0	2
TCGACGT	25	3.8872706E-5	45.0	26
CGGTAGT	60	3.6379788E-12	41.250004	12
GTACGAG	60	3.6379788E-12	41.250004	1
TACACGG	50	1.0786607E-9	40.5	2
TACGAGG	90	0.0	40.0	2
TCGTTGA	80	0.0	39.375004	24
TTAATCG	80	0.0	39.375004	20
CGTTGAT	80	0.0	39.375004	25
CGATGGT	80	0.0	39.375004	10
TAATCGT	80	0.0	39.375004	21
ACGGGCT	155	0.0	39.193546	5
AACGGGA	115	0.0	39.130436	4
ATGGGTA	70	0.0	38.571426	5