SRR3551965_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551965_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	313208
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2666	0.8511915404459657	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCG	2055	0.6561135092334807	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTC	1637	0.5226558708589819	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGC	1634	0.521698040918495	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	1422	0.4540113917907589	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	876	0.27968634262215525	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCC	813	0.25957191387193174	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGCT	676	0.21583101325636636	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCT	435	0.13888534137059078	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	375	0.11972874256085413	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATTG	20	7.0254196E-4	45.0	1
GTTTGCG	20	7.0254196E-4	45.0	1
CTGTACG	20	7.0254196E-4	45.0	1
TTCACGG	20	7.0254196E-4	45.0	2
ATGTACG	20	7.0254196E-4	45.0	1
CACTACC	20	7.0254196E-4	45.0	23
CATACCG	20	7.0254196E-4	45.0	5
TAAGCAG	25	3.884286E-5	45.0	1
TACCGAA	20	7.0254196E-4	45.0	7
GCGCGAC	80	0.0	42.1875	9
ATGGGCG	75	0.0	42.0	5
CGTTTTT	1315	0.0	41.74905	1
AAGGGCG	115	0.0	41.08696	5
CGACAGG	50	1.0768417E-9	40.5	2
CTCGTAC	45	1.920671E-8	40.0	29
TACGGTT	45	1.920671E-8	40.0	33
CGTTCAT	45	1.920671E-8	40.0	17
TCTCGTA	45	1.920671E-8	40.0	28
TCGTACG	45	1.920671E-8	40.0	30
ACGGTTA	45	1.920671E-8	40.0	34