SRR3551962_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551962_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	225980
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2030	0.8983095849190194	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCG	1356	0.6000531020444286	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGC	1184	0.5239401716966103	No Hit
GAATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTC	1129	0.49960173466678465	No Hit
GCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	821	0.36330648729976106	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCC	642	0.2840959376936012	No Hit
CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT	448	0.19824763253385255	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	414	0.18320205327905123	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCT	330	0.1460306221789539	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	259	0.11461191255863351	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATGGCGAT	240	0.10620408885742101	No Hit
GAACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCT	239	0.1057615718205151	No Hit
TCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	233	0.10310646959907957	No Hit
CGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG	230	0.1017789184883618	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGC	227	0.10045136737764403	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	30	2.157738E-6	45.000004	31
CCATTAC	30	2.157738E-6	45.000004	6
ACACGAC	40	6.7739165E-9	45.0	26
AATTTGC	25	3.8808284E-5	45.0	45
CTCAACC	20	7.021246E-4	45.0	36
GATTTGC	20	7.021246E-4	45.0	37
TTATCTT	25	3.8808284E-5	45.0	26
ATCGTTG	20	7.021246E-4	45.0	23
TGAATAG	20	7.021246E-4	45.0	1
TGCGTAG	20	7.021246E-4	45.0	1
TAGGGCA	55	6.002665E-11	40.909092	5
TTATGGG	105	0.0	40.714287	3
CGTTTTT	995	0.0	40.703514	1
TGATAGG	45	1.9164872E-8	40.0	2
GAATGAC	45	1.9164872E-8	40.0	1
GACACGA	45	1.9164872E-8	40.0	25
CGACCAA	45	1.9164872E-8	40.0	29
CACGACC	45	1.9164872E-8	40.0	27
AATGACT	45	1.9164872E-8	40.0	2
AGACACG	45	1.9164872E-8	40.0	24