##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551962_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 225980 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.302340915125235 33.0 31.0 34.0 30.0 34.0 2 32.38292769271617 34.0 31.0 34.0 30.0 34.0 3 32.373772015222585 34.0 31.0 34.0 30.0 34.0 4 35.94759270731923 37.0 35.0 37.0 35.0 37.0 5 36.015160633684395 37.0 35.0 37.0 35.0 37.0 6 36.00159748650323 37.0 35.0 37.0 35.0 37.0 7 36.159996459863706 37.0 36.0 37.0 35.0 37.0 8 35.975887246659 37.0 35.0 37.0 35.0 37.0 9 37.89128241437295 39.0 38.0 39.0 35.0 39.0 10 37.614930524825205 39.0 37.0 39.0 35.0 39.0 11 37.58786175767767 39.0 37.0 39.0 35.0 39.0 12 37.51222232055934 39.0 37.0 39.0 35.0 39.0 13 37.49497300646075 39.0 37.0 39.0 35.0 39.0 14 38.7466678467121 40.0 38.0 41.0 35.0 41.0 15 38.79322506416497 40.0 38.0 41.0 35.0 41.0 16 38.816868749446854 40.0 38.0 41.0 35.0 41.0 17 38.74651739091955 40.0 38.0 41.0 35.0 41.0 18 38.64369855739446 40.0 38.0 41.0 35.0 41.0 19 38.54950438091866 40.0 37.0 41.0 35.0 41.0 20 38.42605982830339 40.0 37.0 41.0 34.0 41.0 21 38.359385786352775 40.0 37.0 41.0 34.0 41.0 22 38.386574033100274 40.0 37.0 41.0 34.0 41.0 23 38.346247455527035 40.0 37.0 41.0 34.0 41.0 24 38.25982830338968 40.0 37.0 41.0 34.0 41.0 25 38.11160279670767 40.0 36.0 41.0 34.0 41.0 26 38.123736613859634 40.0 37.0 41.0 34.0 41.0 27 38.108593680856714 40.0 36.0 41.0 34.0 41.0 28 38.030723957872375 40.0 36.0 41.0 34.0 41.0 29 37.964138419329146 40.0 36.0 41.0 34.0 41.0 30 37.805743871139036 40.0 36.0 41.0 33.0 41.0 31 37.74733162226746 40.0 36.0 41.0 33.0 41.0 32 37.6039472519692 40.0 36.0 41.0 33.0 41.0 33 37.449066289052126 40.0 36.0 41.0 33.0 41.0 34 37.31212054164085 40.0 35.0 41.0 33.0 41.0 35 37.193348968935304 40.0 35.0 41.0 33.0 41.0 36 37.0970528365342 40.0 35.0 41.0 32.0 41.0 37 37.067762633861406 40.0 35.0 41.0 32.0 41.0 38 36.94577396229755 40.0 35.0 41.0 32.0 41.0 39 36.90304009204355 40.0 35.0 41.0 32.0 41.0 40 36.80964244623418 39.0 35.0 41.0 31.0 41.0 41 36.71169572528542 39.0 35.0 41.0 31.0 41.0 42 36.59532259491991 39.0 35.0 41.0 31.0 41.0 43 36.47561731126648 39.0 35.0 41.0 31.0 41.0 44 36.520997433401185 39.0 35.0 41.0 31.0 41.0 45 36.479737144880076 39.0 35.0 41.0 31.0 41.0 46 36.38035666873174 39.0 35.0 41.0 31.0 41.0 47 36.28389680502699 39.0 35.0 41.0 31.0 41.0 48 36.26377555535888 39.0 35.0 41.0 31.0 41.0 49 36.23709177803345 39.0 35.0 41.0 31.0 41.0 50 36.130515974865034 38.0 35.0 41.0 31.0 41.0 51 35.25482343570228 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 4.0 11 3.0 12 5.0 13 7.0 14 8.0 15 8.0 16 15.0 17 28.0 18 53.0 19 90.0 20 182.0 21 287.0 22 457.0 23 680.0 24 968.0 25 1416.0 26 1980.0 27 2360.0 28 2467.0 29 2587.0 30 2791.0 31 3429.0 32 4439.0 33 6146.0 34 11655.0 35 16652.0 36 16121.0 37 23568.0 38 43131.0 39 84326.0 40 115.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.97999822993185 19.26984688910523 22.24798654748208 14.502168333480839 2 34.38180369944243 26.289052128506945 22.37366138596336 16.955482786087263 3 31.62403752544473 25.685458890167272 26.59748650323037 16.093017081157623 4 28.58350296486415 24.306575803168425 28.447207717497125 18.66271351447031 5 26.548367112133818 27.49092840074343 25.273033011770952 20.687671475351802 6 24.906628905212852 34.445083635719975 25.893441897513053 14.75484556155412 7 73.8786618284804 6.717851137268785 14.186653686166917 5.2168333480839015 8 73.34365873086114 8.418886627135144 12.66882024957961 5.568634392424109 9 66.97672360385874 8.288344101247898 14.920346933356935 9.81458536153642 10 37.29312328524648 24.711036374900434 21.359412337374987 16.636428002478095 11 29.74643773785291 23.888397203292328 26.14656164262324 20.218603416231527 12 26.3377290025666 21.359854854411893 31.04566775820869 21.256748384812816 13 24.73935746526241 22.45419948668024 32.734755288078595 20.071687759978758 14 20.584565005752722 27.47455527037791 30.315957164350827 21.62492255951854 15 19.336666961678027 24.323391450570846 35.13187007699796 21.208071510753165 16 21.31162049738915 24.489335339410566 31.359412337374987 22.839631825825293 17 21.361182405522612 23.756527126294362 30.514647313921582 24.36764315426144 18 22.58828214886273 24.003451632887867 29.941587751128417 23.466678467120985 19 22.959553942826798 25.008407823701212 29.220284980971766 22.81175325250022 20 25.26816532436499 24.951765642977257 29.53358704310116 20.246481989556596 21 23.76227984777414 26.281971855916453 29.634923444552612 20.32082485175679 22 22.08912293123285 24.252146207628993 28.766262501106294 24.89246836003186 23 22.6683777325427 26.030179661916986 29.00964687140455 22.291795734135764 24 22.895831489512346 24.948225506682007 28.81493937516594 23.341003628639704 25 21.63908310469953 27.102398442340032 27.667492698468894 23.59102575449155 26 20.851845296043898 27.09797327197097 28.874236658111336 23.175944773873795 27 23.273298521993098 26.04478272413488 28.334365873086114 22.34755288078591 28 20.30400920435437 26.683777325427027 30.129657491813433 22.88255597840517 29 22.69935392512612 26.340384104788033 28.42065669528277 22.53960527480308 30 22.76219134436676 26.897955571289494 28.317992742720595 22.021860341623153 31 23.22285157978582 26.55765996990884 26.770068147623682 23.449420302681652 32 25.42658642357731 27.467032480750508 25.733250730153113 21.37313036551907 33 24.430923090538986 26.48287459067174 25.473935746526244 23.61226657226303 34 22.957783874679176 26.298787503318877 27.079830073457828 23.66359854854412 35 24.568545889016725 26.54615452694929 25.358881316930702 23.52641826710328 36 23.02239136206744 29.89777856447473 25.759801752367466 21.320028321090362 37 23.632179838923797 27.600230108859193 27.31215151783344 21.45543853438357 38 24.49995574829631 26.512080715107533 26.248783078148506 22.73918045844765 39 25.640764669439776 24.661916983803877 26.156297017435172 23.54102132932118 40 25.131870076997963 24.06142136472254 28.267103283476413 22.53960527480308 41 21.78998141428445 27.060359323833964 26.714311000973538 24.435348260908047 42 22.61881582440924 27.398442340030094 27.8104257013895 22.172316134171165 43 23.754314541109835 26.20497389149482 27.428976015576602 22.611735551818747 44 23.839277812195768 24.765023453402957 28.054695105761574 23.341003628639704 45 24.01584210992123 23.6848393663156 26.956367820161077 25.342950703602092 46 24.405699619435346 26.002743605628815 26.5996990884149 22.99185768652093 47 21.83025046464289 26.135056199663687 29.866359854854412 22.16833348083901 48 22.68519337994513 25.273033011770952 28.18612266572263 23.855650942561287 49 22.75997875918223 24.2972829453934 29.976546597043985 22.966191698380385 50 21.930259314983626 23.81405434109213 29.102575449154795 25.153110894769448 51 21.568280378794583 23.387467917514822 27.448004248163553 27.59624745552704 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 209.0 1 386.0 2 563.0 3 1866.0 4 3169.0 5 2068.5 6 968.0 7 1019.0 8 1070.0 9 1022.0 10 974.0 11 939.5 12 905.0 13 895.5 14 886.0 15 861.5 16 837.0 17 845.0 18 853.0 19 855.5 20 858.0 21 976.5 22 1095.0 23 1113.0 24 1131.0 25 1330.0 26 1782.5 27 2036.0 28 2282.5 29 2529.0 30 2917.0 31 3305.0 32 3651.5 33 3998.0 34 4549.5 35 5101.0 36 5142.0 37 5183.0 38 5777.0 39 6371.0 40 7349.0 41 8327.0 42 9464.0 43 10601.0 44 11523.5 45 12446.0 46 16445.0 47 20444.0 48 20782.0 49 21120.0 50 20764.5 51 20409.0 52 18113.0 53 15817.0 54 14268.0 55 12719.0 56 11825.5 57 10932.0 58 10634.0 59 10336.0 60 9911.5 61 9487.0 62 8725.5 63 7964.0 64 7086.0 65 6208.0 66 5291.5 67 4375.0 68 3783.0 69 3191.0 70 2881.5 71 2572.0 72 2300.5 73 2029.0 74 1776.5 75 1204.5 76 885.0 77 662.0 78 439.0 79 384.5 80 330.0 81 249.5 82 169.0 83 117.0 84 65.0 85 39.0 86 13.0 87 9.0 88 5.0 89 2.5 90 0.0 91 0.5 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 225980.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.72169620859818 #Duplication Level Percentage of deduplicated Percentage of total 1 69.3378992313615 31.00908465167343 2 9.857985673407969 8.817316810297287 3 5.289134276892611 7.09617169013025 4 4.093997339317979 7.323620211511517 5 3.135995517865849 7.012351943076103 6 2.32499662275959 6.238667558944268 7 1.7599974422369153 5.509704965774042 8 1.2489981848340923 4.468585390979267 9 0.9239986571545079 3.719050851817492 >10 1.9529971617129 11.84944340665637 >50 0.03599994768134377 1.1050715073161188 >100 0.0319999534945278 2.6479677842245 >500 0.0019999970934079874 0.6542774646715831 >1k 0.003999994186815975 2.5486857629277866 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2030 0.8983095849190194 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCG 1356 0.6000531020444286 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGC 1184 0.5239401716966103 No Hit GAATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTC 1129 0.49960173466678465 No Hit GCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC 821 0.36330648729976106 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCC 642 0.2840959376936012 No Hit CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT 448 0.19824763253385255 Illumina Single End Adapter 1 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC 414 0.18320205327905123 No Hit GAATGACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCT 330 0.1460306221789539 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 259 0.11461191255863351 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATGGCGAT 240 0.10620408885742101 No Hit GAACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCT 239 0.1057615718205151 No Hit TCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC 233 0.10310646959907957 No Hit CGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG 230 0.1017789184883618 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGC 227 0.10045136737764403 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2057704221612532 0.0 2 0.0 0.0 0.0 0.9620320382334719 0.0 3 0.0 0.0 0.0 1.3527745818214 0.0 4 0.0 0.0 0.0 1.9276042127621913 0.0 5 0.0 0.0 0.0 3.668023718913178 0.0 6 0.0 0.0 0.0 4.540224798654748 0.0 7 0.0 0.0 0.0 5.485441189485795 0.0 8 0.0 0.0 0.0 6.649703513585273 0.0 9 0.0 0.0 0.0 7.15771307195327 0.0 10 0.0 0.0 0.0 8.752986989999116 0.0 11 0.0 0.0 0.0 10.353128595450924 0.0 12 0.0 0.0 0.0 11.991326666076644 0.0 13 0.0 0.0 0.0 12.515266837773254 0.0 14 0.0 0.0 0.0 12.752455969554829 0.0 15 0.0 0.0 0.0 13.238782193114435 0.0 16 0.0 0.0 0.0 13.956987344012745 0.0 17 0.0 0.0 0.0 14.771661208956544 4.425170369059209E-4 18 0.0 0.0 0.0 15.6801486857244 4.425170369059209E-4 19 4.425170369059209E-4 0.0 0.0 16.308080361093904 4.425170369059209E-4 20 4.425170369059209E-4 0.0 0.0 16.810337197982122 4.425170369059209E-4 21 4.425170369059209E-4 0.0 0.0 17.407292680768208 4.425170369059209E-4 22 4.425170369059209E-4 0.0 0.0 18.03212673687937 4.425170369059209E-4 23 4.425170369059209E-4 0.0 0.0 18.637490043366668 4.425170369059209E-4 24 4.425170369059209E-4 0.0 0.0 19.119391096557216 4.425170369059209E-4 25 4.425170369059209E-4 0.0 0.0 19.568545889016725 4.425170369059209E-4 26 4.425170369059209E-4 0.0 0.0 19.987609522966633 4.425170369059209E-4 27 4.425170369059209E-4 0.0 0.0 20.41331091247013 4.425170369059209E-4 28 4.425170369059209E-4 0.0 0.0 20.841224887158155 4.425170369059209E-4 29 4.425170369059209E-4 0.0 0.0 21.25055314629613 4.425170369059209E-4 30 4.425170369059209E-4 0.0 0.0 21.73466678467121 4.425170369059209E-4 31 4.425170369059209E-4 0.0 0.0 22.203734843791487 4.425170369059209E-4 32 4.425170369059209E-4 0.0 0.0 22.649349499955747 4.425170369059209E-4 33 4.425170369059209E-4 0.0 0.0 23.083458713160457 4.425170369059209E-4 34 4.425170369059209E-4 0.0 0.0 23.500309761925834 4.425170369059209E-4 35 4.425170369059209E-4 0.0 0.0 23.924683600318613 4.425170369059209E-4 36 4.425170369059209E-4 0.0 0.0 24.383573767590054 4.425170369059209E-4 37 4.425170369059209E-4 0.0 0.0 24.826975838569783 4.425170369059209E-4 38 4.425170369059209E-4 0.0 0.0 25.255332330294717 4.425170369059209E-4 39 4.425170369059209E-4 0.0 0.0 25.66820072572794 4.425170369059209E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGCGAA 30 2.157738E-6 45.000004 31 CCATTAC 30 2.157738E-6 45.000004 6 ACACGAC 40 6.7739165E-9 45.0 26 AATTTGC 25 3.8808284E-5 45.0 45 CTCAACC 20 7.021246E-4 45.0 36 GATTTGC 20 7.021246E-4 45.0 37 TTATCTT 25 3.8808284E-5 45.0 26 ATCGTTG 20 7.021246E-4 45.0 23 TGAATAG 20 7.021246E-4 45.0 1 TGCGTAG 20 7.021246E-4 45.0 1 TAGGGCA 55 6.002665E-11 40.909092 5 TTATGGG 105 0.0 40.714287 3 CGTTTTT 995 0.0 40.703514 1 TGATAGG 45 1.9164872E-8 40.0 2 GAATGAC 45 1.9164872E-8 40.0 1 GACACGA 45 1.9164872E-8 40.0 25 CGACCAA 45 1.9164872E-8 40.0 29 CACGACC 45 1.9164872E-8 40.0 27 AATGACT 45 1.9164872E-8 40.0 2 AGACACG 45 1.9164872E-8 40.0 24 >>END_MODULE