SRR3551960_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551960_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	453564
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCG	5306	1.1698459313349385	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGC	4418	0.9740631972555142	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3846	0.8479508955737227	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTC	3659	0.8067218738700601	No Hit
GCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	1552	0.34217883253521003	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAATCGGT	1139	0.2511222231041264	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCT	940	0.20724748877776894	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTA	780	0.17197132047517	No Hit
GAACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCT	744	0.16403418260708522	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCC	618	0.13625420006878852	No Hit
CTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGCT	570	0.12567134957800885	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTC	558	0.1230256369553139	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	465	0.10252136412942825	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTTACG	20	7.028764E-4	45.000004	31
CGTTAGG	40	6.7993824E-9	45.000004	2
CGATGTA	20	7.028764E-4	45.000004	10
TTACGAG	20	7.028764E-4	45.000004	1
ATACGAT	20	7.028764E-4	45.000004	11
GATGAAT	820	0.0	42.80488	20
CGATGAA	785	0.0	42.707005	19
CCGATGA	775	0.0	41.806454	18
TATGCGG	70	0.0	41.785717	2
ATGAATG	850	0.0	41.02941	21
CGTTTTT	1860	0.0	40.887096	1
TACGGCT	490	0.0	40.867348	7
TGAATGA	845	0.0	40.739643	22
GTCGAAT	105	0.0	40.714287	43
TGCGTAG	45	1.9239451E-8	40.000004	1
TAAGCGG	75	0.0	39.0	2
CATACGA	35	6.2399267E-6	38.57143	18
ACATACG	35	6.2399267E-6	38.57143	17
AGGGAAC	240	0.0	38.437504	6
ACGGCTG	530	0.0	38.207546	8