SRR3551959_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551959_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	470452
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2534	0.5386309336552932	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCG	2383	0.506534141634003	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTC	2262	0.48081419570965794	No Hit
GCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	2093	0.4448912960302007	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGC	1728	0.36730633518403577	No Hit
CCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	1199	0.2548612823412378	No Hit
CTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGCT	944	0.2006580905172047	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCC	842	0.1789768137875915	No Hit
TCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	658	0.13986549105966176	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	544	0.11563347589127052	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCT	483	0.10266722216081556	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	45	3.8380676E-10	45.0	25
CCCTACG	20	7.0290343E-4	45.0	31
CGCATCG	35	1.2098826E-7	45.0	21
CGTTCAT	25	3.887281E-5	45.0	17
TACATCG	20	7.0290343E-4	45.0	21
CGCCTAT	20	7.0290343E-4	45.0	27
CCGTATA	20	7.0290343E-4	45.0	45
AATGACG	20	7.0290343E-4	45.0	1
GAACGCC	20	7.0290343E-4	45.0	24
TTAACGG	20	7.0290343E-4	45.0	2
CCAACGG	25	3.887281E-5	45.0	2
CGCCGAT	20	7.0290343E-4	45.0	40
CAATCGA	25	3.887281E-5	45.0	41
TCGACAG	20	7.0290343E-4	45.0	1
ATTTGCG	45	3.8380676E-10	45.0	12
ATCGACC	20	7.0290343E-4	45.0	24
TACCGGT	20	7.0290343E-4	45.0	40
CGCCAGT	35	1.2098826E-7	45.0	26
TTTAGCG	30	2.1627584E-6	44.999996	1
GCTACGA	65	0.0	41.53846	10