SRR3551958_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551958_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	364067
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3684	1.0119016554645162	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCG	3568	0.9800393883543413	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGC	3309	0.9088986367893822	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTC	3121	0.8572597900935817	Illumina PCR Primer Index 11 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGC	1409	0.38701667550203667	Illumina PCR Primer Index 11 (95% over 24bp)
GAATGACTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCT	836	0.229628062966432	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCC	754	0.20710473621613604	No Hit
CCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGC	716	0.19666709699038915	Illumina PCR Primer Index 11 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGCT	639	0.17551714382242828	Illumina PCR Primer Index 11 (96% over 25bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTTACAGCT	570	0.15656458838620363	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTC	568	0.1560152389532696	No Hit
GAACTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCT	518	0.14228150312991839	Illumina PCR Primer Index 11 (95% over 22bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTTACAGCTCGTA	462	0.12689971900776503	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTCA	20	7.0269307E-4	45.0	16
TTGTGCG	50	2.1827873E-11	45.0	1
CACGGCC	20	7.0269307E-4	45.0	17
AACTTCG	25	3.885537E-5	45.0	11
CGATTCG	20	7.0269307E-4	45.0	10
CGTTCAT	20	7.0269307E-4	45.0	17
CCCGTTA	40	6.7921064E-9	45.0	40
AGGTTCG	20	7.0269307E-4	45.0	43
GGAACGA	20	7.0269307E-4	45.0	8
GCGATTC	25	3.885537E-5	45.0	9
CGTAAGG	35	1.208864E-7	45.0	2
ACCCGTT	35	1.208864E-7	45.0	39
CGCAATT	25	3.885537E-5	45.0	20
CGGTAGT	25	3.885537E-5	45.0	12
CGTCATA	20	7.0269307E-4	45.0	38
CCGTTAC	20	7.0269307E-4	45.0	41
CCGTTAA	20	7.0269307E-4	45.0	41
CCGCAAT	20	7.0269307E-4	45.0	19
AGGTCGG	20	7.0269307E-4	45.0	2
CGGACCT	20	7.0269307E-4	45.0	21