SRR3551957_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551957_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	629598
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14664	2.3291052385808086	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTC	2691	0.42741558899488247	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCG	2636	0.4186798560351208	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGC	2169	0.3445055416313267	No Hit
GCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGC	1094	0.1737616701450767	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCC	858	0.13627743417228136	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	750	0.1191236312694767	No Hit
GAACTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCT	701	0.1113408873598709	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTAAG	20	7.030852E-4	45.000004	1
TAAGACG	20	7.030852E-4	45.000004	1
CGTTTTT	5515	0.0	42.633728	1
CCGTCGA	65	0.0	41.538464	41
CGGTCTA	60	3.6379788E-12	41.250004	31
GTCGAAT	55	6.002665E-11	40.909092	43
AACGGGA	205	0.0	39.512196	4
TACGAAT	40	3.4548975E-7	39.375004	12
CGAATAT	40	3.4548975E-7	39.375004	14
CATACGA	110	0.0	38.86364	18
GCAAACG	35	6.2437866E-6	38.57143	1
TTAAACG	35	6.2437866E-6	38.57143	1
ATGCGAG	35	6.2437866E-6	38.57143	1
CGATGAA	440	0.0	38.352276	19
TATTAGT	100	0.0	38.250004	30
GTACGAG	65	9.094947E-12	38.076927	1
CGGCGAA	95	0.0	37.894737	31
CGCATCG	30	1.1393352E-4	37.500004	21
GTTAGCG	30	1.1393352E-4	37.500004	1
CGTTCGG	60	1.546141E-10	37.500004	45