SRR3551956_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551956_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	587372
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3568	0.6074514958152585	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCG	1806	0.30747124479886684	No Hit
GCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC	1663	0.28312551500582256	TruSeq Adapter, Index 13 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTC	1630	0.27750726966896616	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGC	1445	0.24601104581083197	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCC	809	0.13773213568232737	No Hit
CTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGCT	693	0.11798315207398379	Illumina Single End Adapter 2 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC	655	0.11151365744366433	TruSeq Adapter, Index 13 (95% over 22bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	616	0.10487391295465225	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGACGTA	20	7.0304656E-4	45.000004	8
GCGATTC	20	7.0304656E-4	45.000004	9
TTACGCG	25	3.8884675E-5	45.000004	1
CGGTCTA	30	2.1636824E-6	45.000004	31
CTAAGCG	35	1.2105738E-7	45.0	1
TACGAAT	110	0.0	42.954544	12
CACAACG	75	0.0	42.0	12
CGAATAT	115	0.0	41.086956	14
TACGCGG	50	1.0804797E-9	40.500004	2
CGTTTTT	1680	0.0	40.44643	1
CGGGTAC	45	1.9255822E-8	40.0	6
CATCGTT	45	1.9255822E-8	40.0	36
GCTACGA	120	0.0	39.375004	10
TAACGGG	110	0.0	38.863636	3
TCGTTTA	35	6.2430736E-6	38.571426	38
TAACGCC	35	6.2430736E-6	38.571426	12
GTTCGAT	35	6.2430736E-6	38.571426	39
ATAACGC	35	6.2430736E-6	38.571426	11
GCCCGAA	35	6.2430736E-6	38.571426	25
ATCGTGA	30	1.1392423E-4	37.500004	30