SRR3551954_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551954_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	338290
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9327	2.757101894823968	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCG	1785	0.5276537881699134	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGC	1564	0.4623252239203051	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTC	1371	0.40527358183806794	No Hit
GCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTCTGC	1325	0.39167578113452955	RNA PCR Primer, Index 33 (95% over 24bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCC	958	0.2831889798693429	No Hit
CTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTCTGCT	663	0.19598569274882496	TruSeq Adapter, Index 1 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTCTGC	488	0.14425492920275504	Illumina Paired End PCR Primer 2 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTCTGC	422	0.12474504123680866	RNA PCR Primer, Index 33 (95% over 24bp)
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	393	0.11617251470631706	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCT	371	0.10966921871766828	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	367	0.10848680126518667	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGC	346	0.10227910963965829	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	339	0.10020987909781548	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCTCGT	20	7.0262206E-4	45.0	14
CGTATGG	40	6.7902874E-9	45.0	2
CGCATCG	20	7.0262206E-4	45.0	21
TAAACGG	25	3.8849495E-5	45.0	2
GAATACG	20	7.0262206E-4	45.0	21
GCCGCAT	20	7.0262206E-4	45.0	19
TAACCGG	20	7.0262206E-4	45.0	2
CGGATGG	20	7.0262206E-4	45.0	2
GCCCTCG	20	7.0262206E-4	45.0	13
AACGCCG	20	7.0262206E-4	45.0	13
CGAATGC	25	3.8849495E-5	45.0	45
GCGATCT	20	7.0262206E-4	45.0	9
TTAACCG	20	7.0262206E-4	45.0	1
GCGGCTA	25	3.8849495E-5	45.0	24
CTCGAAT	20	7.0262206E-4	45.0	43
ACGTATG	20	7.0262206E-4	45.0	1
TAGTGAG	25	3.8849495E-5	45.0	1
CCAGTCG	20	7.0262206E-4	45.0	28
CGATAGA	20	7.0262206E-4	45.0	10
TACACGG	25	3.8849495E-5	45.0	2