SRR3551951_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551951_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	391756
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGC	13933	3.5565505059271585	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTC	12585	3.212458775360173	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCG	11490	2.9329480595064275	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGC	3792	0.9679494379154372	TruSeq Adapter, Index 15 (95% over 23bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGCAGTAT	3555	0.9074525980457224	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3379	0.8625266747669468	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCT	2623	0.6695494134103881	No Hit
GAACTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCT	2580	0.6585731935184146	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCAGTATCGTA	2479	0.6327918398186626	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTC	2347	0.599097397359581	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTT	998	0.2547504058648751	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGC	843	0.21518496206822615	TruSeq Adapter, Index 15 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGCT	795	0.20293243753765097	TruSeq Adapter, Index 14 (95% over 22bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATG	771	0.1968061752723634	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCAGCAGTA	544	0.13886194467985175	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCAGCAGTATCGT	543	0.13860668375213142	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTAT	508	0.12967255128192037	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGA	30	2.1618253E-6	45.000004	41
CGATCGA	115	0.0	45.000004	41
GCATAAG	20	7.0275884E-4	45.0	1
TCGCAGG	45	3.8380676E-10	45.0	2
CGAGTGG	20	7.0275884E-4	45.0	29
ACCGCAG	25	3.8860824E-5	45.0	23
CTCCATA	20	7.0275884E-4	45.0	11
CACGATC	20	7.0275884E-4	45.0	39
TGACGCG	20	7.0275884E-4	45.0	1
TAGCACG	20	7.0275884E-4	45.0	1
ACGATCG	50	2.1827873E-11	45.0	40
TGCGATG	20	7.0275884E-4	45.0	1
TACGACC	20	7.0275884E-4	45.0	6
AACGCGA	20	7.0275884E-4	45.0	25
CGTAAGC	45	3.8380676E-10	45.0	43
CACCGTA	25	3.8860824E-5	45.0	40
TAGCTAG	20	7.0275884E-4	45.0	1
GCACTAC	20	7.0275884E-4	45.0	9
AAATGCG	20	7.0275884E-4	45.0	1
CCGACTT	55	1.8189894E-12	44.999996	44