##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551950_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 740472 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.035112738901674 33.0 31.0 34.0 30.0 34.0 2 32.14424043042816 33.0 31.0 34.0 30.0 34.0 3 32.14851473114446 33.0 31.0 34.0 30.0 34.0 4 35.78337330783608 37.0 35.0 37.0 35.0 37.0 5 35.78939379206776 37.0 35.0 37.0 35.0 37.0 6 35.669563467626055 37.0 35.0 37.0 35.0 37.0 7 35.84199402543243 37.0 35.0 37.0 35.0 37.0 8 35.04905924869543 37.0 35.0 37.0 32.0 37.0 9 36.6946164068324 39.0 37.0 39.0 32.0 39.0 10 36.6441337417215 38.0 35.0 39.0 32.0 39.0 11 37.05137398848302 39.0 37.0 39.0 34.0 39.0 12 37.08730917576897 39.0 37.0 39.0 34.0 39.0 13 37.14507638371201 39.0 37.0 39.0 33.0 39.0 14 38.29547909981741 40.0 38.0 41.0 34.0 41.0 15 38.17114354087663 40.0 38.0 41.0 33.0 41.0 16 38.44704863924632 40.0 38.0 41.0 34.0 41.0 17 38.1669948357264 40.0 37.0 41.0 33.0 41.0 18 38.12492437256237 40.0 37.0 41.0 34.0 41.0 19 37.99442247647446 40.0 37.0 41.0 33.0 41.0 20 37.68121144351171 40.0 36.0 41.0 32.0 41.0 21 37.958874879806395 40.0 36.0 41.0 33.0 41.0 22 37.98858565887704 40.0 37.0 41.0 33.0 41.0 23 37.880270962305126 40.0 36.0 41.0 33.0 41.0 24 37.817624434144705 40.0 36.0 41.0 33.0 41.0 25 37.811432437688396 40.0 36.0 41.0 33.0 41.0 26 37.780661524000905 40.0 36.0 41.0 33.0 41.0 27 37.67213074903575 40.0 36.0 41.0 33.0 41.0 28 37.509344040017716 40.0 36.0 41.0 33.0 41.0 29 37.64646198640867 40.0 36.0 41.0 33.0 41.0 30 37.293961149104895 40.0 36.0 41.0 32.0 41.0 31 37.21357593534935 40.0 36.0 41.0 31.0 41.0 32 36.95490578982055 40.0 36.0 41.0 31.0 41.0 33 36.70958658801413 40.0 35.0 41.0 30.0 41.0 34 36.451529564926155 40.0 35.0 41.0 30.0 41.0 35 36.373671117881564 40.0 35.0 41.0 29.0 41.0 36 36.16616563489234 40.0 35.0 41.0 28.0 41.0 37 36.10505191283398 40.0 35.0 41.0 28.0 41.0 38 35.90392479391523 39.0 35.0 41.0 26.0 41.0 39 35.84070160654285 39.0 35.0 41.0 26.0 41.0 40 35.69590612474206 39.0 35.0 41.0 25.0 41.0 41 35.65815722944284 39.0 35.0 41.0 25.0 41.0 42 35.69735114899686 39.0 35.0 41.0 25.0 41.0 43 35.69488785531391 39.0 35.0 41.0 25.0 41.0 44 35.93519944035696 39.0 35.0 41.0 26.0 41.0 45 35.95422784386175 39.0 35.0 41.0 26.0 41.0 46 35.86192590671896 39.0 35.0 41.0 26.0 41.0 47 35.67453192018064 39.0 35.0 41.0 26.0 41.0 48 35.71106672500783 39.0 35.0 41.0 26.0 41.0 49 35.72897827331756 39.0 35.0 41.0 26.0 41.0 50 35.59486921855249 39.0 35.0 41.0 26.0 41.0 51 34.75815020689506 38.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 2.0 10 5.0 11 4.0 12 2.0 13 8.0 14 15.0 15 18.0 16 23.0 17 74.0 18 190.0 19 650.0 20 2161.0 21 4140.0 22 5510.0 23 6368.0 24 7146.0 25 8604.0 26 10006.0 27 10245.0 28 9651.0 29 8856.0 30 9847.0 31 12150.0 32 15696.0 33 21576.0 34 36090.0 35 45973.0 36 50476.0 37 78046.0 38 148473.0 39 248381.0 40 84.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 50.25578279799912 15.658931060188635 18.800305750926434 15.284980390885814 2 27.176989811903756 39.25536684709213 20.21494398167655 13.352699359327563 3 23.735266154560875 38.25505893538176 25.6576886094275 12.35198630062987 4 22.474178632007693 19.602631834829676 43.56113397940773 14.362055553754901 5 35.49708834365108 22.39449972450005 24.795400771399866 17.31301116044901 6 19.60870903963958 43.511976144945386 25.077112976587905 11.802201838827127 7 64.61662291079203 4.059167666029236 27.148494473795093 4.175714949383636 8 62.01301332123295 18.299949221577588 13.81821324776629 5.868824209423179 9 58.022450545057744 5.545381864540455 13.7343478213896 22.6978197690122 10 41.21168659989844 18.739263604835834 22.830302833868128 17.218746961397596 11 31.499232921703996 18.931438325824608 28.19471904406919 21.374609708402208 12 21.850117222528333 16.161988569452998 33.14723581715447 28.840658390864206 13 24.737599801207878 17.785277498676518 40.19895418057671 17.278168519538887 14 19.327672079430418 28.725866744454887 29.8874231571214 22.05903801899329 15 15.178021586231486 20.37079052280167 40.84759450728724 23.6035933836796 16 16.939465638133512 21.859840750224183 28.679004742920732 32.52168886872157 17 17.683180457870115 26.923502846832832 33.53563672900528 21.85767996629177 18 17.517610389049146 22.800457005801704 31.728005920547975 27.95392668460117 19 18.167331107725886 24.275192039671992 28.70614959107164 28.851327261530486 20 23.392376754286456 23.26502555127 35.87806156073424 17.46453613370931 21 21.192023466113504 31.653323825884033 29.43392862930671 17.720724078695753 22 18.636356270054776 19.858819779816116 35.647938071932494 25.85688587819661 23 22.76912563878175 26.902975399474933 29.911326829373696 20.416572132369623 24 22.300910770427514 24.082612171695892 27.6157639991789 26.000713058697695 25 16.96039823247874 34.75958577772016 25.698608455147525 22.58140753465357 26 17.65306453181214 20.925436748452338 35.36122905390076 26.060269665834763 27 26.489455374409836 24.49505180479478 26.466091898140647 22.54940092265474 28 16.205744444084313 25.846622154517657 35.20713814972072 22.74049525167731 29 23.270967707084132 18.221350706036148 34.408593437699196 24.099088149180524 30 22.33359262740522 29.6232673213842 29.782490087403712 18.26064996380687 31 24.078695750818397 20.469781436705237 28.656451560626195 26.79507125185017 32 30.435857128966386 27.113651832884972 25.080219103490748 17.370271934657893 33 24.474659406432654 23.63505979969533 24.554743460927625 27.335537332944394 34 27.69692844564008 21.38824965697555 29.1731490184639 21.741672878920472 35 27.122430017610387 24.663187804535486 24.881832128696292 23.332550049157835 36 21.039418100887 25.528851867457515 30.96605948638166 22.465670545273824 37 28.398913125681997 21.534642768396374 29.545749197808963 20.520694908112663 38 20.028036171523027 26.195318661610433 27.331891010058452 26.44475415680809 39 30.41924610248598 23.26191942436716 25.560048185481694 20.758786287665167 40 21.034016141055975 28.821886580451388 27.391312568199744 22.752784710292893 41 23.92811612052853 23.965524692358386 24.107461186918613 27.998898000194473 42 21.44226925528582 24.945035058719302 31.18294817359738 22.429747512397498 43 22.845833468382327 22.13074903575017 26.391814950464028 28.631602545403474 44 24.565682429585454 20.404957918732915 30.88503008891626 24.14432956276537 45 20.902748517162024 20.073007487116325 29.585318553571238 29.43892544215041 46 29.89404055791441 24.565007184606575 25.22971834181441 20.3112339156646 47 18.644459209801315 23.840604371265893 36.847173154420425 20.667763264512367 48 23.932302639397573 24.396060890891217 26.667720048833715 25.00391642087749 49 21.233888654803962 20.67856718417442 35.42011041605895 22.667433744962672 50 23.490827472206917 20.228313832258344 29.783030283386815 26.49782841214793 51 21.351921477111897 19.217877245864802 28.68184077183202 30.748360505191286 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 84.0 1 254.0 2 424.0 3 5818.5 4 11213.0 5 7481.5 6 3750.0 7 3662.5 8 3575.0 9 3543.0 10 3511.0 11 3359.0 12 3207.0 13 3079.0 14 2951.0 15 2733.5 16 2516.0 17 2405.0 18 2294.0 19 2191.5 20 2089.0 21 2091.0 22 2093.0 23 2166.0 24 2239.0 25 2608.0 26 3565.5 27 4154.0 28 5190.5 29 6227.0 30 6849.5 31 7472.0 32 8876.0 33 10280.0 34 11766.0 35 13252.0 36 15031.5 37 16811.0 38 18299.5 39 19788.0 40 21554.0 41 23320.0 42 25054.5 43 26789.0 44 32101.0 45 37413.0 46 92924.0 47 148435.0 48 109517.5 49 70600.0 50 69304.5 51 68009.0 52 58383.0 53 48757.0 54 45789.0 55 42821.0 56 39516.0 57 36211.0 58 32709.0 59 29207.0 60 26614.0 61 24021.0 62 21831.5 63 19642.0 64 17427.5 65 15213.0 66 12886.0 67 10559.0 68 9063.0 69 7567.0 70 6197.5 71 4828.0 72 3903.5 73 2979.0 74 2301.0 75 1281.0 76 939.0 77 655.0 78 371.0 79 271.0 80 171.0 81 115.0 82 59.0 83 40.0 84 21.0 85 14.5 86 8.0 87 4.0 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 740472.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.892445125267898 #Duplication Level Percentage of deduplicated Percentage of total 1 72.87003113685208 23.24003469308618 2 9.341451394035525 5.958434519492706 3 3.5317733912633402 3.3791066722724215 4 2.0593708701916795 2.627134898806533 5 1.474297163554762 2.350947069350418 6 1.2916545633245644 2.4716413368978327 7 1.1105912737099268 2.4793629877376655 8 1.012852318936706 2.584186960135139 9 0.9126626603802688 2.619633943265286 >10 6.297653137112409 31.547361194243617 >50 0.05970608164912243 1.306534656019157 >100 0.02857362474504045 1.609162137944433 >500 0.0021323600556000335 0.42123025451896784 >1k 0.004264720111200067 3.179424743182239 >5k 0.0017058880444800269 3.7820954754307197 >10k+ 0.0012794160333600203 10.443708457616708 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGC 28378 3.8324204021218895 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCG 24288 3.28007000939941 No Hit GAATCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTC 24119 3.257246729113322 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTGAGACT 7988 1.0787713782560313 No Hit GCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGC 7752 1.0468998152529738 TruSeq Adapter, Index 15 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6267 0.8463520565261076 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCT 5800 0.7832841754988711 No Hit GAACTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCT 4823 0.651341306626044 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTGAGACTCGTA 4277 0.5776045549325295 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTC 4245 0.5732829870677082 No Hit CCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGC 1992 0.2690175995851295 TruSeq Adapter, Index 15 (95% over 22bp) GAATGCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTT 1749 0.23620069361164228 No Hit CTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGCT 1442 0.19474065190851242 TruSeq Adapter, Index 14 (95% over 22bp) GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTGTGAGAC 1404 0.18960879006903705 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATG 1353 0.182721291284478 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTAT 1049 0.1416663965686751 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGTGAGACTCGT 1042 0.14072105359824544 No Hit TGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGCTT 796 0.10749900063743126 TruSeq Adapter, Index 15 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.19906221977333377 0.0 2 0.0 0.0 0.0 1.6764982335591352 0.0 3 0.0 0.0 0.0 1.9919726876910944 0.0 4 0.0 0.0 0.0 2.9474443328039412 0.0 5 0.0 0.0 0.0 7.107628647673376 0.0 6 0.0 0.0 0.0 8.017858879201373 0.0 7 0.0 0.0 0.0 9.421288043302111 0.0 8 0.0 0.0 0.0 10.88751499043853 0.0 9 0.0 0.0 0.0 11.241208310375004 0.0 10 0.0 0.0 0.0 15.305507838243715 0.0 11 0.0 0.0 0.0 16.397243920094212 0.0 12 0.0 0.0 0.0 21.213901403429166 0.0 13 0.0 0.0 0.0 21.73086895925842 0.0 14 0.0 0.0 0.0 22.011770870471807 0.0 15 0.0 0.0 0.0 22.850019987251375 0.0 16 0.0 0.0 0.0 23.517026977387395 0.0 17 0.0 0.0 0.0 24.210638619691224 0.0 18 0.0 0.0 0.0 24.815388022774663 0.0 19 0.0 0.0 0.0 26.452046802579975 0.0 20 0.0 0.0 0.0 27.07003100724943 0.0 21 0.0 0.0 0.0 27.629944143735347 0.0 22 0.0 0.0 0.0 28.305594269601013 0.0 23 0.0 0.0 0.0 28.866857896044685 0.0 24 0.0 0.0 0.0 29.322648256787563 0.0 25 0.0 0.0 0.0 29.73859916377662 0.0 26 0.0 0.0 0.0 30.15036355189663 0.0 27 0.0 0.0 0.0 30.60385807971132 0.0 28 0.0 0.0 0.0 30.996445510431183 0.0 29 0.0 0.0 0.0 31.394704998973626 0.0 30 0.0 0.0 0.0 31.818353698721896 0.0 31 0.0 0.0 0.0 32.24038181052086 0.0 32 0.0 0.0 0.0 32.64985036571268 0.0 33 0.0 0.0 0.0 33.0732289674694 0.0 34 1.350489957756674E-4 0.0 0.0 33.47864605278795 0.0 35 1.350489957756674E-4 0.0 0.0 33.90378029148975 0.0 36 1.350489957756674E-4 0.0 0.0 34.31378904266468 0.0 37 1.350489957756674E-4 0.0 0.0 34.711373286228245 0.0 38 2.700979915513348E-4 0.0 0.0 35.12894478116661 0.0 39 2.700979915513348E-4 0.0 0.0 35.52706922071327 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAT 20 7.0316583E-4 45.000004 13 AATTTCG 20 7.0316583E-4 45.000004 27 ATTAGCG 35 1.2111377E-7 45.000004 1 GCGAATG 20 7.0316583E-4 45.000004 1 TTCGTAG 20 7.0316583E-4 45.000004 1 TTATCCG 20 7.0316583E-4 45.000004 1 ACGGCTA 40 6.8102963E-9 45.000004 30 CGGCTAT 20 7.0316583E-4 45.000004 31 CGCGTAA 30 2.1644519E-6 45.000004 41 CAATCGT 20 7.0316583E-4 45.000004 10 CAATACG 20 7.0316583E-4 45.000004 17 CGATTTA 45 3.8380676E-10 45.0 10 CTCGAAT 565 0.0 44.20354 43 CGTTTTT 3860 0.0 43.834198 1 TACGGCT 3060 0.0 43.676468 7 TCGAATG 600 0.0 43.5 44 TGATACC 2645 0.0 43.29868 4 GATACCT 2640 0.0 43.210228 5 ACGGCTG 3105 0.0 43.188404 8 CGATGAA 2910 0.0 42.912373 19 >>END_MODULE