##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551933_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 703065 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.977256725907278 33.0 31.0 34.0 30.0 34.0 2 32.07312979596481 33.0 31.0 34.0 30.0 34.0 3 32.091311614146626 33.0 31.0 34.0 30.0 34.0 4 35.749781314672184 37.0 35.0 37.0 35.0 37.0 5 35.747992006428994 37.0 35.0 37.0 35.0 37.0 6 35.64267884192785 37.0 35.0 37.0 35.0 37.0 7 35.834790524346964 37.0 35.0 37.0 35.0 37.0 8 35.07791313747662 37.0 35.0 37.0 32.0 37.0 9 36.817046787992574 39.0 37.0 39.0 32.0 39.0 10 36.60142518828273 38.0 35.0 39.0 32.0 39.0 11 36.999977242502474 39.0 37.0 39.0 34.0 39.0 12 37.07758742079324 39.0 37.0 39.0 34.0 39.0 13 37.13038481505978 39.0 37.0 39.0 33.0 39.0 14 38.2489471101534 40.0 38.0 41.0 33.0 41.0 15 38.119937701350516 40.0 37.0 41.0 33.0 41.0 16 38.40735778341974 40.0 38.0 41.0 34.0 41.0 17 38.15725430792317 40.0 37.0 41.0 33.0 41.0 18 38.072666111952664 40.0 37.0 41.0 34.0 41.0 19 38.00959939692631 40.0 37.0 41.0 34.0 41.0 20 37.77353871974853 40.0 36.0 41.0 33.0 41.0 21 37.951254862637164 40.0 36.0 41.0 33.0 41.0 22 38.02005788938434 40.0 37.0 41.0 34.0 41.0 23 37.90503154046923 40.0 36.0 41.0 33.0 41.0 24 37.791993627900695 40.0 36.0 41.0 33.0 41.0 25 37.73943376501462 39.0 36.0 41.0 33.0 41.0 26 37.71733196788348 40.0 36.0 41.0 33.0 41.0 27 37.68965173917063 40.0 36.0 41.0 33.0 41.0 28 37.529164444254796 40.0 36.0 41.0 33.0 41.0 29 37.57771187585785 40.0 36.0 41.0 33.0 41.0 30 37.32691287434306 40.0 36.0 41.0 32.0 41.0 31 37.21353502165518 40.0 36.0 41.0 31.0 41.0 32 37.012711484713364 40.0 36.0 41.0 31.0 41.0 33 36.851080625546714 40.0 36.0 41.0 30.0 41.0 34 36.65508736745536 40.0 36.0 41.0 30.0 41.0 35 36.61648638461593 40.0 36.0 41.0 30.0 41.0 36 36.54478319927745 40.0 35.0 41.0 30.0 41.0 37 36.63023475781044 40.0 36.0 41.0 30.0 41.0 38 36.31016335616195 40.0 35.0 41.0 29.0 41.0 39 36.239930874101255 39.0 35.0 41.0 29.0 41.0 40 36.300561114548444 39.0 35.0 41.0 29.0 41.0 41 35.95415359888488 39.0 35.0 41.0 26.0 41.0 42 36.0831829204981 39.0 35.0 41.0 29.0 41.0 43 36.02535754162133 39.0 35.0 41.0 29.0 41.0 44 36.206438949457024 39.0 35.0 41.0 29.0 41.0 45 36.221101889583466 39.0 35.0 41.0 29.0 41.0 46 36.14303656134212 39.0 35.0 41.0 29.0 41.0 47 35.877123736781094 39.0 35.0 41.0 28.0 41.0 48 35.95829119640432 39.0 35.0 41.0 28.0 41.0 49 36.01411960487295 39.0 35.0 41.0 29.0 41.0 50 35.81910776386252 39.0 35.0 41.0 28.0 41.0 51 35.11182038645075 38.0 35.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 4.0 11 6.0 12 4.0 13 6.0 14 16.0 15 28.0 16 31.0 17 83.0 18 178.0 19 480.0 20 1096.0 21 2245.0 22 3909.0 23 5332.0 24 6647.0 25 7993.0 26 8891.0 27 9003.0 28 8677.0 29 8275.0 30 9286.0 31 11863.0 32 15386.0 33 21206.0 34 34830.0 35 43849.0 36 49608.0 37 77500.0 38 148894.0 39 227664.0 40 73.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 49.719869428857926 16.171904446957253 18.990562750243576 15.117663373941243 2 26.64618491889086 39.27688051602626 20.28631776578268 13.790616799300206 3 23.626549465554394 38.84235454758806 25.29254051901318 12.238555467844368 4 22.545852801661297 19.612553604574256 43.773619793333474 14.06797380043097 5 35.23073968978686 22.368628789656718 24.60313057825379 17.797500942302634 6 19.64925006933925 42.92462290115423 25.511581432726704 11.914545596779815 7 65.42794762930882 3.508210478405269 26.782445435343817 4.281396456942104 8 61.98559165937716 17.424989154630083 14.020183055620747 6.569236130372014 9 58.22491519276311 4.883190032216082 14.109363999061253 22.782530775959547 10 40.602646981431306 19.098660863504797 22.80983977299396 17.488852382069936 11 29.67293209020503 19.105914815842063 29.10555922994318 22.11559386400973 12 21.03247921600421 16.044889163875318 34.17550297625397 28.7471286438665 13 23.372803368109636 18.148819810401598 41.26161876924609 17.21675805224268 14 19.491227695874493 28.301366161023516 29.903636221402003 22.303769921699985 15 14.909290037194284 20.3608485701891 42.42737158015262 22.302489812463996 16 15.974056452817306 22.5878119377298 28.709863241663285 32.72826836778961 17 17.581731418858855 25.584263190458916 33.95489748458535 22.879107906096877 18 17.206517178354773 22.56377433096513 32.38406121766835 27.845647273011743 19 17.4137526402253 24.226636228513723 29.686871057441344 28.67274007381963 20 21.857438501418788 23.62413148144197 36.36064944208572 18.15778057505352 21 20.768207775952437 31.34304794009089 29.55686885280877 18.331875431147903 22 17.94727372291324 19.83955964242282 34.94328404912775 27.269882585536187 23 21.06433971254436 27.90225654811433 30.441993272314793 20.59141046702652 24 22.274896346710474 23.314771749411506 27.483234124867543 26.927097779010477 25 16.421667982334494 34.65753522078329 25.460946000725393 23.45985079615683 26 17.65341753607419 22.5962037649435 32.64918606387745 27.101192635104866 27 24.328333795595004 25.15841351795353 25.353559059261947 25.159693627189522 28 15.407110295634116 27.245702744411965 33.09082375029336 24.25636320966056 29 20.374076365627644 22.825770021264034 28.57829645907562 28.221857154032698 30 17.252458876490795 28.801035466137552 28.537475197883555 25.409030459488097 31 21.250808957919965 25.516844104030213 24.695725146323596 28.53662179172623 32 23.227866555723867 27.35892129461714 24.44041447092374 24.97279767873525 33 21.42490381401435 19.916935134020324 24.040024748778563 34.61813630318676 34 22.03878730985044 25.006507221949608 29.081521623178514 23.873183845021444 35 20.443913436168774 20.22117442910684 28.515286637793093 30.81962549693129 36 22.80002560218472 31.38074004537276 23.907746794393123 21.911487558049398 37 17.54531942281297 20.84985029833657 31.012210819767734 30.59261945908273 38 18.844914766060036 26.57037400524845 23.507783775326605 31.07692745336491 39 22.69733239458656 21.585486405951084 28.943127591332242 26.774053608130117 40 18.70438721882045 19.378435848747984 32.00301536842255 29.914161564009017 41 21.941925710994003 23.852417628526524 29.2674219311159 24.93823472936357 42 20.080646881867253 20.239807130208444 36.17745158697986 23.502094400944436 43 27.763578047548947 21.794570914495814 24.741240141380956 25.700610896574283 44 21.452497279767872 20.214347179848236 30.870118694573044 27.46303684581084 45 19.276738281666702 19.60117485580992 28.95223059034371 32.16985627217967 46 28.52766102707431 23.56581539402473 25.31615142269918 22.590372156201774 47 17.005682262664195 21.407266753429628 37.94172658289063 23.645324401015554 48 21.75474529382063 23.967342991046348 27.08597355863256 27.191938156500466 49 19.645978679069504 18.04285521253369 37.59581262045472 24.71535348794208 50 23.785709713895585 18.86411640459986 30.142447711093567 27.207726170410986 51 20.37052050663879 18.578652044974504 27.723894661233313 33.32693278715339 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 39.0 1 189.0 2 339.0 3 4745.5 4 9152.0 5 6225.0 6 3298.0 7 3253.0 8 3208.0 9 3149.0 10 3090.0 11 3034.5 12 2979.0 13 2799.0 14 2619.0 15 2454.0 16 2289.0 17 2227.0 18 2165.0 19 2062.5 20 1960.0 21 1947.5 22 1935.0 23 1935.5 24 1936.0 25 2145.0 26 3019.0 27 3684.0 28 4306.5 29 4929.0 30 5971.5 31 7014.0 32 7907.0 33 8800.0 34 10234.5 35 11669.0 36 13016.0 37 14363.0 38 15847.0 39 17331.0 40 18812.5 41 20294.0 42 23524.0 43 26754.0 44 31261.5 45 35769.0 46 94506.5 47 153244.0 48 112221.5 49 71199.0 50 70123.5 51 69048.0 52 57530.5 53 46013.0 54 42225.5 55 38438.0 56 34155.0 57 29872.0 58 27102.0 59 24332.0 60 22406.0 61 20480.0 62 18941.5 63 17403.0 64 15554.0 65 13705.0 66 12380.0 67 11055.0 68 9131.0 69 7207.0 70 6314.0 71 5421.0 72 4488.5 73 3556.0 74 2766.0 75 1508.5 76 1041.0 77 790.0 78 539.0 79 404.0 80 269.0 81 219.0 82 169.0 83 113.5 84 58.0 85 48.0 86 38.0 87 22.0 88 6.0 89 5.0 90 4.0 91 2.5 92 1.0 93 10.5 94 20.0 95 10.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 703065.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.409506505143465 #Duplication Level Percentage of deduplicated Percentage of total 1 73.03297525850077 22.939297114718617 2 10.226324718304408 6.424076255265835 3 3.6395334737606366 3.4294785095931632 4 1.9887849286135466 2.498670126104739 5 1.3204580458623607 2.0737467790641424 6 1.0362681044637985 1.952920186093702 7 0.9303603273223509 2.045551112721115 8 0.7905403721892628 1.9864386370285747 9 0.7484535217752651 2.1157700184897954 >10 6.173698511873612 32.02542069525211 >50 0.06519105845882486 1.345987298058104 >100 0.03692640373925741 1.922184413605409 >500 0.002735289165870919 0.5654578552836531 >1k 0.0041029337488063785 2.843183381745307 >5k 0.002279407638225766 4.498890948381134 >10k+ 0.0013676445829354596 11.332926668594585 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGC 29740 4.230049853143024 No Hit GAATCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTC 25193 3.583310220249906 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCG 24213 3.443920547886753 No Hit GCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC 8713 1.2392879747960714 TruSeq Adapter, Index 20 (95% over 23bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACACCTTGT 6568 0.9341952735522321 No Hit GAATGACTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCT 5823 0.8282306756843251 No Hit GAACTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCT 5226 0.7433167630304452 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5089 0.7238306557715147 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACACCTTGTCGTA 4891 0.6956682525797757 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTC 4724 0.671915114534218 No Hit GAATGCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTT 2188 0.3112087787046717 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATG 1611 0.22913955324187665 No Hit CCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC 1491 0.21207143009536814 TruSeq Adapter, Index 20 (95% over 23bp) CTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGCT 1458 0.20737769623007832 TruSeq Adapter, Index 22 (95% over 22bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACACCTTGTCGT 1213 0.17253027813929012 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCACACCTTG 1155 0.16428068528514433 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCACACCTTGTCGTAT 1125 0.1600136544985172 No Hit TGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGCTT 851 0.12104143998065613 TruSeq Adapter, Index 20 (96% over 25bp) GAATGATACGGCGACCACCGATGAATGATACGGCGACCCCCTGTCGAATGC 731 0.10397331683414764 No Hit TCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC 718 0.10212427015994253 TruSeq Adapter, Index 20 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.8446871910847504E-4 0.0 0.0 0.21320930497180204 0.0 2 2.8446871910847504E-4 0.0 0.0 1.8848897328127556 0.0 3 2.8446871910847504E-4 0.0 0.0 2.2477295840356155 0.0 4 2.8446871910847504E-4 0.0 0.0 3.3934273502449988 0.0 5 2.8446871910847504E-4 0.0 0.0 8.119021712074986 0.0 6 2.8446871910847504E-4 0.0 0.0 9.187912924125081 0.0 7 2.8446871910847504E-4 0.0 0.0 10.765291971581576 0.0 8 2.8446871910847504E-4 0.0 0.0 12.58006016513409 0.0 9 2.8446871910847504E-4 0.0 0.0 12.991970870403163 0.0 10 2.8446871910847504E-4 0.0 0.0 17.362548270785773 0.0 11 2.8446871910847504E-4 0.0 0.0 18.724726732236707 0.0 12 2.8446871910847504E-4 0.0 0.0 24.20416319970415 0.0 13 2.8446871910847504E-4 0.0 0.0 24.84891155156351 0.0 14 2.8446871910847504E-4 0.0 0.0 25.194825513999415 0.0 15 2.8446871910847504E-4 0.0 0.0 26.21564151252018 0.0 16 2.8446871910847504E-4 0.0 0.0 27.00404656752932 0.0 17 2.8446871910847504E-4 0.0 0.0 27.87722330083278 0.0 18 2.8446871910847504E-4 0.0 0.0 28.6464267173021 0.0 19 4.2670307866271253E-4 0.0 0.0 30.217547452938206 0.0 20 4.2670307866271253E-4 0.0 0.0 30.899561207000776 0.0 21 4.2670307866271253E-4 0.0 0.0 31.59963872472673 0.0 22 4.2670307866271253E-4 0.0 0.0 32.365428516566745 0.0 23 4.2670307866271253E-4 0.0 0.0 33.048437911146195 0.0 24 4.2670307866271253E-4 0.0 0.0 33.59604019543001 0.0 25 4.2670307866271253E-4 0.0 0.0 34.08091712715041 0.0 26 4.2670307866271253E-4 0.0 0.0 34.60149488311892 0.0 27 4.2670307866271253E-4 0.0 0.0 35.10315546926671 0.0 28 4.2670307866271253E-4 0.0 0.0 35.56356809114378 0.0 29 4.2670307866271253E-4 0.0 0.0 36.022700603784855 0.0 30 4.2670307866271253E-4 0.0 0.0 36.539580266404954 0.0 31 4.2670307866271253E-4 0.0 0.0 37.022608151451145 0.0 32 4.2670307866271253E-4 0.0 0.0 37.48259407024955 0.0 33 4.2670307866271253E-4 0.0 0.0 37.9626350337451 0.0 34 4.2670307866271253E-4 0.0 0.0 38.4257501084537 0.0 35 4.2670307866271253E-4 0.0 0.0 38.90095510372441 0.0 36 4.2670307866271253E-4 0.0 0.0 39.36947508409607 0.0 37 5.689374382169501E-4 0.0 0.0 39.83358579932154 0.0 38 5.689374382169501E-4 0.0 0.0 40.30594610740116 0.0 39 5.689374382169501E-4 0.0 0.0 40.75597562103077 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTCGA 95 0.0 45.000004 41 ACGGACG 30 2.1642936E-6 45.000004 43 TTAACGA 30 2.1642936E-6 45.000004 44 CTCGAAT 30 2.1642936E-6 45.000004 43 ACGCCTA 20 7.031416E-4 45.0 30 ATTAGCG 45 3.8380676E-10 45.0 1 GATCGAT 20 7.031416E-4 45.0 9 CGACGTA 20 7.031416E-4 45.0 45 ACGCTTA 20 7.031416E-4 45.0 30 ATAACGG 25 3.8892547E-5 45.0 2 ATACGAT 20 7.031416E-4 45.0 14 CCTATCG 25 3.8892547E-5 45.0 40 TGTACGG 85 0.0 45.0 2 CGTTTTT 3430 0.0 43.622448 1 GTCGAAT 305 0.0 43.52459 43 ACGGCTG 3370 0.0 43.063797 8 CCGATGA 2115 0.0 42.87234 18 CGATGAA 2165 0.0 42.817554 19 TACGGCT 3410 0.0 42.49267 7 CGAATGC 345 0.0 42.391304 45 >>END_MODULE