SRR3551927_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551927_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	232024
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGC	5928	2.5549081129538322	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCG	5150	2.2195979726235215	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTC	4953	2.134692962796952	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2680	1.1550529255594248	No Hit
GCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	2344	1.0102403199669	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCAAATGCT	1346	0.5801124021652933	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCT	1240	0.5344274730200325	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTC	897	0.3865979381443299	No Hit
CCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	858	0.3697893321380547	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCAAATGCTCGTA	848	0.3654794331620867	No Hit
GAACTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT	727	0.31332965555287384	No Hit
CTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGCT	503	0.21678791849119058	Illumina Single End Adapter 1 (95% over 22bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATG	271	0.1167982622487329	No Hit
TCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	263	0.11335034306795848	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCCAAATGC	259	0.11162638347757128	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATCC	25	3.881153E-5	45.0	17
TTGTGCG	20	7.0216384E-4	45.0	1
CCTAGGG	20	7.0216384E-4	45.0	3
GTCTCAA	20	7.0216384E-4	45.0	42
ATTAACG	20	7.0216384E-4	45.0	11
AAACGGG	20	7.0216384E-4	45.0	3
CGCTAGT	20	7.0216384E-4	45.0	4
AACGCTC	50	2.1827873E-11	45.0	39
CTCGATC	20	7.0216384E-4	45.0	16
AGTTATC	35	1.2063356E-7	45.0	19
TCATAGG	20	7.0216384E-4	45.0	2
GCTACGA	25	3.881153E-5	45.0	10
CTGGGTA	40	6.7739165E-9	45.0	5
GGCCTAA	25	3.881153E-5	45.0	41
GTTATTC	20	7.0216384E-4	45.0	9
GTTATCT	50	2.1827873E-11	45.0	25
CGGACTG	20	7.0216384E-4	45.0	40
CGTAAGG	30	2.157989E-6	44.999996	2
GCGCTAG	30	2.157989E-6	44.999996	1
TATCCTA	60	0.0	44.999996	24