##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551924_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 274161 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.999332509000187 33.0 31.0 34.0 30.0 34.0 2 32.10906000488764 33.0 31.0 34.0 30.0 34.0 3 32.10718519410128 33.0 31.0 34.0 30.0 34.0 4 35.74156791082612 37.0 35.0 37.0 35.0 37.0 5 35.76916483380204 37.0 35.0 37.0 35.0 37.0 6 35.653010457358995 37.0 35.0 37.0 35.0 37.0 7 35.80017216161307 37.0 35.0 37.0 35.0 37.0 8 35.02540478040276 37.0 35.0 37.0 32.0 37.0 9 36.81657857973964 39.0 37.0 39.0 32.0 39.0 10 36.71542633707931 38.0 35.0 39.0 32.0 39.0 11 37.02570022723874 39.0 37.0 39.0 34.0 39.0 12 37.01377657653715 39.0 37.0 39.0 33.0 39.0 13 37.07930741425659 39.0 37.0 39.0 33.0 39.0 14 38.16710618942884 40.0 37.0 41.0 33.0 41.0 15 38.09020976725355 40.0 37.0 41.0 33.0 41.0 16 38.31520165158429 40.0 37.0 41.0 34.0 41.0 17 38.14263151943566 40.0 37.0 41.0 33.0 41.0 18 38.04736632854418 40.0 37.0 41.0 34.0 41.0 19 37.97804209935038 40.0 37.0 41.0 34.0 41.0 20 37.84466791410886 40.0 36.0 41.0 33.0 41.0 21 37.87725095837847 40.0 36.0 41.0 33.0 41.0 22 37.94156718132776 40.0 36.0 41.0 34.0 41.0 23 37.943708259015686 40.0 36.0 41.0 34.0 41.0 24 37.80761669238149 40.0 36.0 41.0 33.0 41.0 25 37.664613128781994 39.0 35.0 41.0 33.0 41.0 26 37.72127326643833 40.0 36.0 41.0 33.0 41.0 27 37.70824077822885 40.0 36.0 41.0 33.0 41.0 28 37.48059351986606 40.0 35.0 41.0 33.0 41.0 29 37.58830760027867 40.0 35.0 41.0 33.0 41.0 30 37.23656537581932 39.0 35.0 41.0 32.0 41.0 31 37.045039228774336 39.0 35.0 41.0 31.0 41.0 32 36.9791983542517 39.0 35.0 41.0 31.0 41.0 33 36.85824023110508 40.0 35.0 41.0 31.0 41.0 34 36.676095432975515 40.0 35.0 41.0 31.0 41.0 35 36.669376753075746 40.0 35.0 41.0 31.0 41.0 36 36.34883882098475 39.0 35.0 41.0 30.0 41.0 37 36.359139337834335 39.0 35.0 41.0 30.0 41.0 38 36.0101619121611 39.0 35.0 41.0 29.0 41.0 39 36.05651059049245 39.0 35.0 41.0 30.0 41.0 40 36.02173175615788 39.0 35.0 41.0 29.0 41.0 41 35.856361772826915 39.0 35.0 41.0 27.0 41.0 42 35.96061803101097 39.0 35.0 41.0 29.0 41.0 43 35.900923180175155 39.0 35.0 41.0 29.0 41.0 44 36.044524932430214 39.0 35.0 41.0 29.0 41.0 45 35.94634174809692 39.0 35.0 41.0 28.0 41.0 46 35.87183808054392 39.0 35.0 41.0 28.0 41.0 47 35.688733992070354 39.0 35.0 41.0 28.0 41.0 48 35.6301224462998 38.0 35.0 41.0 28.0 41.0 49 35.644030332541824 38.0 35.0 40.0 28.0 41.0 50 35.5312790659503 38.0 35.0 40.0 28.0 41.0 51 34.56517155977692 37.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 3.0 10 7.0 11 2.0 12 7.0 13 6.0 14 7.0 15 14.0 16 24.0 17 46.0 18 96.0 19 205.0 20 499.0 21 961.0 22 1316.0 23 1588.0 24 1917.0 25 2474.0 26 3246.0 27 3642.0 28 3602.0 29 3796.0 30 4121.0 31 4990.0 32 6400.0 33 8848.0 34 16229.0 35 20279.0 36 19924.0 37 31201.0 38 57740.0 39 80954.0 40 15.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.844514719453166 15.498922166172433 17.819821199951853 18.836741914422547 2 29.048989462396186 33.85638365777773 20.218776558299687 16.875850321526404 3 27.291627912066268 32.1613942172665 25.2636224700085 15.283355400658738 4 26.563953297514963 20.61671791392649 36.11016884239553 16.70915994616302 5 32.0278960173037 22.904060023125098 24.495095947271857 20.572948012299342 6 22.74977111988941 37.204051633893954 25.65208034694942 14.39409689926722 7 66.01121238980015 5.5766502164786385 22.504294921597165 5.907842472124044 8 63.04871954800282 15.369071458011899 14.286131141920258 7.296077852065028 9 58.86431695244765 7.303737584849777 15.387673666203435 18.444271796499137 10 42.98277289621792 19.722352924011805 22.17966815119583 15.115206028574452 11 31.84770992227195 21.66683080379777 25.785578546912213 20.699880727018066 12 26.09926284190676 18.18347613263739 30.209986103056234 25.507274922399613 13 25.74727988298846 20.973807361367953 34.51621492480695 18.762697830836625 14 20.163699432085526 27.8179609791327 28.01127804465259 24.00706154412918 15 17.062966650982453 22.78624603791203 37.39007371580932 22.760713595296195 16 19.062521656982575 23.302730877112353 29.341153555757383 28.293593910147685 17 18.98008834225145 26.059869930442332 31.845521427190594 23.114520300115625 18 19.019116504535656 23.673680793402415 30.624705920973444 26.68249678108848 19 20.378171950058544 25.321982338844695 28.113407815115938 26.18643789598083 20 24.279529181758164 24.44184256695883 33.73236893650082 17.54625931478219 21 23.010566783751155 29.18066391645785 28.79731252804009 19.011456771750908 22 19.402832642133635 22.32447357574564 32.5356268761786 25.73706690594213 23 21.786468534911968 26.705111230262514 29.874416857248114 21.63400337757741 24 23.039017219808798 23.14588872961508 28.461378533051747 25.35371551752437 25 19.039542458628326 31.265205481450682 26.23531428613114 23.459937773789854 26 19.883936810852017 23.37823395741918 31.241861533916204 25.4959676978126 27 25.158574706103348 25.771353328883396 26.925419735119142 22.144652229894113 28 18.78713602591178 25.7812015567495 33.33989881857741 22.091763598761315 29 24.934983458624675 20.773195312243537 30.616681439008463 23.675139790123325 30 23.180539901736573 26.31045261725774 30.393090191529794 20.11591728947589 31 25.31541685360062 22.1778444052947 27.15958870882438 25.347150032280304 32 25.62326516171155 25.55177432238721 29.29701890495001 19.52794161095123 33 23.454831285266685 21.70038772837858 28.365084749472025 26.479696236882706 34 27.688110270972167 21.673761038222068 28.368002742913834 22.270125947891934 35 24.6278646488742 20.564558781154137 29.813138994970107 24.994437575001548 36 26.135737759929384 23.25020699515978 27.137703758010804 23.476351486900032 37 25.536819605997934 21.776255557865635 32.92481425147997 19.76211058465646 38 20.38400793694216 22.434627828173955 31.767100353441958 25.41426388144193 39 25.162586947085835 21.412600625180094 31.44247358304062 21.982338844693448 40 22.316084344600434 19.99555006000124 35.25191402132324 22.436451574075086 41 23.61276768030464 22.279609426577814 27.072778403930535 27.03484448918701 42 21.225849044904272 20.01779975999504 34.88570584437611 23.870645350724573 43 23.92134548677602 21.22694329244495 27.504641433318376 27.347069787460654 44 23.890706555637017 20.088561100958927 30.9121282749917 25.108604068412355 45 21.868901849643095 19.384959932302554 29.650096111408992 29.096042106645363 46 26.861223879399333 22.554995057648608 28.31949110194375 22.264289961008313 47 19.112857043853793 21.493939692370542 37.61621820754958 21.776985056226085 48 22.484963215045173 22.50465967077739 29.325469341007654 25.68490777316978 49 20.612705672944003 18.940330681606792 36.97462439953166 23.472339245917546 50 22.694329244495023 19.309456851995723 31.511411178103376 26.484802725405878 51 20.712646948325983 19.250367484799078 28.967650395205734 31.0693351716692 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 67.0 1 218.0 2 369.0 3 2349.5 4 4330.0 5 2907.0 6 1484.0 7 1432.0 8 1380.0 9 1392.5 10 1405.0 11 1270.0 12 1135.0 13 1109.5 14 1084.0 15 1044.0 16 1004.0 17 857.0 18 710.0 19 704.0 20 698.0 21 780.5 22 863.0 23 875.0 24 887.0 25 987.5 26 1396.0 27 1704.0 28 1881.5 29 2059.0 30 2405.0 31 2751.0 32 3328.0 33 3905.0 34 4367.0 35 4829.0 36 5148.5 37 5468.0 38 6096.5 39 6725.0 40 7533.0 41 8341.0 42 9613.5 43 10886.0 44 12568.0 45 14250.0 46 28579.5 47 42909.0 48 34227.5 49 25546.0 50 25813.5 51 26081.0 52 22153.0 53 18225.0 54 16536.5 55 14848.0 56 14015.0 57 13182.0 58 12740.0 59 12298.0 60 11799.5 61 11301.0 62 9991.0 63 8681.0 64 7869.5 65 7058.0 66 6020.5 67 4983.0 68 4349.5 69 3716.0 70 3233.0 71 2750.0 72 2371.0 73 1992.0 74 1740.5 75 1130.5 76 772.0 77 665.0 78 558.0 79 366.0 80 174.0 81 153.5 82 133.0 83 78.5 84 24.0 85 20.0 86 16.0 87 9.0 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 274161.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.53970112452172 #Duplication Level Percentage of deduplicated Percentage of total 1 74.16868508559465 26.359329007408057 2 9.028490496325793 6.41739707690007 3 3.33244386058541 3.5530217645835838 4 1.848392791165483 2.6276530943496703 5 1.356788045486268 2.4109920812952974 6 1.1730777125497762 2.501449877991399 7 1.027341023851554 2.5557975058451055 8 0.9821831766492878 2.7925197238119206 9 0.8313149144053532 2.659021523849125 >10 6.160967198981896 32.977338133432546 >50 0.05028942074797815 1.224462998019412 >100 0.027710497146845106 2.1148157469516087 >500 0.002052629418284823 0.543476278537064 >1k 0.00718420296399688 4.2646474152049345 >5k 0.0030789441274272343 6.998077771820207 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGC 7343 2.6783532304011146 No Hit GAATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTC 6115 2.2304412370833195 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCG 5728 2.0892833043357735 No Hit GCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC 2490 0.9082254587632813 RNA PCR Primer, Index 35 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2468 0.9002009767983047 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTTTGTCT 2047 0.7466415719230671 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCT 1300 0.47417393429408267 No Hit GAACTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCT 1209 0.44098175889349694 RNA PCR Primer, Index 35 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC 1091 0.39794135562680316 RNA PCR Primer, Index 10 (95% over 23bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTA 1087 0.3964823589058984 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTC 970 0.3538067048194309 No Hit CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGCT 520 0.18966957371763307 TruSeq Adapter, Index 10 (95% over 24bp) CTGAATGATACCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGC 459 0.16741987372383382 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 399 0.14553492291026077 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATG 393 0.14334642782890344 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGGTTTGTC 366 0.13349819996279558 No Hit GAATGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTT 280 0.10212977046334089 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGT 278 0.10140027210288846 No Hit CTGAATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCT 276 0.10067077374243602 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1965998081419312 0.0 2 0.0 0.0 0.0 1.6920714470694227 0.0 3 0.0 0.0 0.0 2.011226979767363 0.0 4 0.0 0.0 0.0 2.8224291565904704 0.0 5 0.0 0.0 0.0 6.1540481687767405 0.0 6 0.0 0.0 0.0 6.883546529229176 0.0 7 0.0 0.0 0.0 8.16089815838139 0.0 8 0.0 0.0 0.0 9.423295071144327 0.0 9 0.0 0.0 0.0 9.785126257928736 0.0 10 0.0 0.0 0.0 12.695095217773497 0.0 11 0.0 0.0 0.0 13.975000091187296 0.0 12 0.0 0.0 0.0 17.96863886548415 0.0 13 0.0 0.0 0.0 18.559167788270397 0.0 14 0.0 0.0 0.0 18.88087656522992 0.0 15 0.0 0.0 0.0 19.636272117478416 0.0 16 3.6474918022621745E-4 0.0 0.0 20.3887496762851 0.0 17 3.6474918022621745E-4 0.0 0.0 21.17770215311441 0.0 18 3.6474918022621745E-4 0.0 0.0 21.909389008648205 0.0 19 3.6474918022621745E-4 0.0 0.0 23.244006259095933 0.0 20 3.6474918022621745E-4 0.0 0.0 23.857879129416656 0.0 21 3.6474918022621745E-4 0.0 0.0 24.46773975875489 0.0 22 3.6474918022621745E-4 0.0 0.0 25.162586947085835 0.0 23 3.6474918022621745E-4 0.0 0.0 25.754574866592986 0.0 24 3.6474918022621745E-4 0.0 0.0 26.255740240223812 0.0 25 3.6474918022621745E-4 0.0 0.0 26.713135712227487 0.0 26 3.6474918022621745E-4 0.0 0.0 27.111441817034517 0.0 27 3.6474918022621745E-4 0.0 0.0 27.61224244148511 0.0 28 3.6474918022621745E-4 0.0 0.0 28.03389249382662 0.0 29 3.6474918022621745E-4 0.0 0.0 28.42928060519184 0.0 30 3.6474918022621745E-4 0.0 0.0 28.878286846050315 0.0 31 3.6474918022621745E-4 0.0 0.0 29.324375093466976 0.0 32 3.6474918022621745E-4 0.0 0.0 29.80402026546445 0.0 33 3.6474918022621745E-4 0.0 0.0 30.236612793212746 0.0 34 3.6474918022621745E-4 0.0 0.0 30.64039013572317 0.0 35 3.6474918022621745E-4 0.0 0.0 31.08100714543644 0.0 36 3.6474918022621745E-4 0.0 0.0 31.52089465678926 0.0 37 3.6474918022621745E-4 0.0 0.0 31.98084337305452 0.0 38 3.6474918022621745E-4 0.0 0.0 32.41270640244236 0.0 39 3.6474918022621745E-4 0.0 0.0 32.82159023347595 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGACGG 45 3.8198777E-10 45.000004 2 AACGAGC 30 2.159435E-6 45.000004 15 GACGTCT 20 7.0238794E-4 45.0 20 CCTCGTA 20 7.0238794E-4 45.0 40 ACGGGTC 40 6.7830115E-9 45.0 5 TCTAGCG 25 3.8830112E-5 45.0 1 CGAATAT 70 0.0 45.0 14 ATTGGGT 20 7.0238794E-4 45.0 4 ACGTAGG 50 2.1827873E-11 45.0 2 CACCGCT 40 6.7830115E-9 45.0 38 CTAGGCG 20 7.0238794E-4 45.0 1 GATGAAT 625 0.0 43.199997 20 CGATGAA 600 0.0 43.125 19 ATGAATG 630 0.0 42.5 21 CGTTTTT 1425 0.0 42.473686 1 TACGGCT 835 0.0 42.30539 7 GACTATG 75 0.0 42.0 24 CCGATGA 615 0.0 41.341465 18 AAGGGCG 115 0.0 41.086956 5 ACGGCTG 860 0.0 41.07558 8 >>END_MODULE