SRR3551922_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551922_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	401173
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGC	11041	2.7521792343951366	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTC	10166	2.534068843117558	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCG	8805	2.194813708798947	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3597	0.8966206599147998	No Hit
GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	3577	0.8916352795427409	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAACGGAAT	2316	0.5773070470844249	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCT	2031	0.5062653767825851	No Hit
GAACTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCT	1939	0.483332627071114	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAACGGAATCGTA	1678	0.41827341321574485	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTC	1593	0.3970855466344943	No Hit
CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	1161	0.2894013305980213	No Hit
CTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT	701	0.17473758204066575	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATG	616	0.15354971545941526	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	559	0.13934138139904728	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTT	552	0.13759649826882667	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	486	0.12114474304103218	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	464	0.11566082463176734	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAACGGAATCGT	409	0.10195102860860526	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCAACG	20	7.027789E-4	45.000004	2
TTTACGG	20	7.027789E-4	45.000004	2
GCGGTAC	20	7.027789E-4	45.000004	21
GACGTTG	20	7.027789E-4	45.000004	28
TTATCGG	20	7.027789E-4	45.000004	2
TATTGCC	20	7.027789E-4	45.000004	12
CGAATAT	75	0.0	45.000004	14
ATGCGTA	20	7.027789E-4	45.000004	20
CGGTCTA	20	7.027789E-4	45.000004	31
AATAGCG	20	7.027789E-4	45.000004	1
CTAGGCG	20	7.027789E-4	45.000004	1
TCAACGG	20	7.027789E-4	45.000004	3
TGCGTAC	20	7.027789E-4	45.000004	21
ACGCAAA	25	3.8862505E-5	45.0	13
ATTCGTA	35	1.2092823E-7	45.0	32
TTCGTAC	35	1.2092823E-7	45.0	33
AAATTCG	35	1.2092823E-7	45.0	30
CGTAAGC	35	1.2092823E-7	45.0	43
CGATCGA	35	1.2092823E-7	45.0	41
CGTTTTT	1805	0.0	44.376728	1