SRR3551921_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551921_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	399360
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGC	8975	2.247345753205128	No Hit
GAATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTC	8235	2.062049278846154	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCG	7151	1.790614983974359	No Hit
GCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	3536	0.8854166666666666	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2928	0.7331730769230769	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACCCGTAAT	1919	0.4805188301282052	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCT	1611	0.4033954326923077	No Hit
GAACTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCT	1598	0.40014022435897434	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACCCGTAATCGTA	1377	0.3448016826923077	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTC	1270	0.3180088141025641	No Hit
CCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	1187	0.2972255608974359	No Hit
CTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGCT	836	0.2093349358974359	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATG	480	0.1201923076923077	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTT	457	0.11443309294871795	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	431	0.1079226762820513	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	405	0.10141225961538462	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCAACTT	20	7.027751E-4	45.000004	9
CTAACGG	20	7.027751E-4	45.000004	2
CGAATAA	20	7.027751E-4	45.000004	22
GCTAGCG	30	2.1619308E-6	45.000004	1
TTCGGGC	30	2.1619308E-6	45.000004	4
CCGAATA	20	7.027751E-4	45.000004	21
GCGTAAG	20	7.027751E-4	45.000004	1
CCGTAAA	25	3.8862192E-5	45.0	41
CGTAAAC	25	3.8862192E-5	45.0	42
CGTTTTT	1645	0.0	43.35866	1
TACGGCT	1065	0.0	42.676056	7
TACGGGA	80	0.0	42.187504	4
ACGGCTG	1085	0.0	41.8894	8
CCGATGA	485	0.0	41.288662	18
ATGGGCG	60	3.6379788E-12	41.250004	5
GATGAAT	510	0.0	41.02941	20
TAGGGCG	100	0.0	40.5	5
TGATACC	915	0.0	40.081963	4
ATTGGGC	45	1.9228537E-8	40.0	4
GATACCT	920	0.0	39.864132	5