##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551921_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 399360 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.98935546875 33.0 31.0 34.0 30.0 34.0 2 32.086353165064104 33.0 31.0 34.0 30.0 34.0 3 32.08825871394231 33.0 31.0 34.0 30.0 34.0 4 35.6994866786859 37.0 35.0 37.0 33.0 37.0 5 35.75566907051282 37.0 35.0 37.0 35.0 37.0 6 35.656310096153845 37.0 35.0 37.0 35.0 37.0 7 35.80652544070513 37.0 35.0 37.0 35.0 37.0 8 35.20655799278846 37.0 35.0 37.0 32.0 37.0 9 36.95748447516026 39.0 37.0 39.0 32.0 39.0 10 36.70353315304487 38.0 35.0 39.0 32.0 39.0 11 37.03014823717949 39.0 37.0 39.0 34.0 39.0 12 37.04841496394231 39.0 37.0 39.0 33.0 39.0 13 37.14867037259615 39.0 37.0 39.0 34.0 39.0 14 38.19698267227564 40.0 38.0 41.0 33.0 41.0 15 38.16564002403846 40.0 37.0 41.0 33.0 41.0 16 38.34224759615385 40.0 38.0 41.0 34.0 41.0 17 38.21024389022436 40.0 37.0 41.0 34.0 41.0 18 38.07967497996795 40.0 37.0 41.0 34.0 41.0 19 38.021802383814105 40.0 37.0 41.0 34.0 41.0 20 38.003350360576924 40.0 36.0 41.0 34.0 41.0 21 38.00172526041667 40.0 36.0 41.0 34.0 41.0 22 38.11294320913461 40.0 37.0 41.0 34.0 41.0 23 38.10865885416667 40.0 36.0 41.0 34.0 41.0 24 37.94117838541667 40.0 36.0 41.0 34.0 41.0 25 37.74318159054487 39.0 36.0 41.0 33.0 41.0 26 37.81369441105769 40.0 36.0 41.0 33.0 41.0 27 37.85679336939103 40.0 36.0 41.0 34.0 41.0 28 37.71291065705128 40.0 36.0 41.0 33.0 41.0 29 37.76294070512821 40.0 36.0 41.0 33.0 41.0 30 37.44931139823718 40.0 36.0 41.0 33.0 41.0 31 37.34706029647436 39.0 35.0 41.0 33.0 41.0 32 37.26006610576923 40.0 35.0 41.0 33.0 41.0 33 37.179740084134615 40.0 35.0 41.0 32.0 41.0 34 36.979439603365385 40.0 35.0 41.0 31.0 41.0 35 36.93239433092949 40.0 35.0 41.0 31.0 41.0 36 36.84014172676282 40.0 35.0 41.0 31.0 41.0 37 36.89027944711538 40.0 35.0 41.0 31.0 41.0 38 36.70336288060897 40.0 35.0 41.0 31.0 41.0 39 36.585869891826924 39.0 35.0 41.0 31.0 41.0 40 36.39413311298077 39.0 35.0 41.0 30.0 41.0 41 36.17140174278846 39.0 35.0 41.0 30.0 41.0 42 36.422518529647434 39.0 35.0 41.0 30.0 41.0 43 36.39453125 39.0 35.0 41.0 31.0 41.0 44 36.53089943910256 39.0 35.0 41.0 31.0 41.0 45 36.51065705128205 39.0 35.0 41.0 31.0 41.0 46 36.415965544871796 39.0 35.0 41.0 31.0 41.0 47 36.208804086538464 39.0 35.0 41.0 30.0 41.0 48 36.23096955128205 39.0 35.0 41.0 31.0 41.0 49 36.255686598557695 39.0 35.0 41.0 31.0 41.0 50 36.14088291266026 39.0 35.0 41.0 30.0 41.0 51 35.26847956730769 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 2.0 10 5.0 11 6.0 12 11.0 13 13.0 14 15.0 15 23.0 16 39.0 17 54.0 18 95.0 19 200.0 20 358.0 21 706.0 22 1160.0 23 1773.0 24 2410.0 25 3318.0 26 4268.0 27 4892.0 28 4942.0 29 4934.0 30 5477.0 31 6780.0 32 8773.0 33 12303.0 34 23050.0 35 28740.0 36 28983.0 37 44861.0 38 85487.0 39 125649.0 40 32.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.03210136217949 16.148587740384617 17.76642628205128 18.052884615384617 2 30.847105368589745 31.450070112179485 20.697365785256412 17.00545873397436 3 28.93103966346154 30.792267628205128 25.07061298076923 15.206079727564104 4 26.47911658653846 20.895432692307693 34.37875600961539 18.24669471153846 5 30.477764423076927 24.168419471153847 23.881209935897434 21.472606169871796 6 22.930939503205128 36.46459334935898 25.590194310897434 15.014272836538462 7 68.27599158653847 5.462239583333333 20.269681490384617 5.992087339743589 8 66.08373397435898 12.265374599358974 13.935546874999998 7.715344551282051 9 61.19115584935897 7.003956330128205 15.131961137820513 16.672926682692307 10 40.74293870192307 19.51347155448718 23.213892227564102 16.52969751602564 11 30.846604567307693 22.49774639423077 26.57902644230769 20.076622596153847 12 26.412760416666664 18.875951522435898 30.65079126602564 24.060496794871796 13 25.323768028846157 20.530598958333332 34.74258814102564 19.403044871794872 14 20.810546875 27.626702724358974 28.898988381410255 22.663762019230766 15 18.134014423076923 23.279246794871796 37.32346754807692 21.26327123397436 16 20.09364983974359 23.545172275641026 29.55879407051282 26.802383814102566 17 19.513721955128204 26.078725961538463 31.573768028846157 22.83378405448718 18 19.64092548076923 24.157652243589745 31.50791266025641 24.693509615384617 19 20.887419871794872 25.552884615384613 28.763271233974358 24.796424278846153 20 23.197866586538463 24.817457932692307 33.32532051282051 18.65935496794872 21 22.44140625 28.968599759615383 29.28535657051282 19.304637419871796 22 20.086638621794872 22.252854567307693 32.05378605769231 25.606720753205124 23 21.19641426282051 26.69871794871795 30.328024839743588 21.77684294871795 24 23.202373798076923 23.14953926282051 28.617788461538463 25.0302984775641 25 19.489683493589745 30.503054887820515 26.446063701923077 23.561197916666668 26 18.73973357371795 25.13721955128205 30.880909455128204 25.242137419871796 27 23.253455528846153 25.78625801282051 27.090845352564102 23.869441105769234 28 17.52979767628205 25.53485576923077 31.228465544871796 25.706881009615383 29 21.208934294871796 24.58633814102564 27.969751602564102 26.23497596153846 30 20.769981971153847 26.04992988782051 28.291766826923077 24.888321314102562 31 21.58678886217949 23.92052283653846 25.40840344551282 29.084284855769234 32 23.03535657051282 27.82176482371795 24.07927684294872 25.063601762820515 33 23.13075921474359 24.406800881410255 24.29061498397436 28.171824919871796 34 21.775841346153847 25.713641826923077 28.33708934294872 24.173427483974358 35 20.404146634615383 26.86298076923077 24.99599358974359 27.73687900641026 36 19.930388621794872 31.604316907051285 24.57557091346154 23.889723557692307 37 19.262570112179485 24.43409455128205 28.723207131410255 27.580128205128208 38 21.357171474358974 26.107271634615387 23.33984375 29.195713141025642 39 22.764923878205128 24.040965544871796 27.770933493589745 25.423177083333332 40 23.193609775641026 24.37224559294872 29.51697716346154 22.91716746794872 41 18.65710136217949 28.24944911858974 28.329076522435898 24.764372996794872 42 19.601362179487182 27.090094150641026 29.037710336538463 24.270833333333332 43 22.353265224358974 26.898788060897438 25.38787059294872 25.360076121794872 44 21.925080128205128 22.581129807692307 28.525641025641026 26.968149038461537 45 20.706881009615387 21.817658253205128 26.983673878205128 30.491786858974358 46 25.25340544871795 25.427433894230766 25.871895032051285 23.447265625 47 18.525641025641026 24.180438701923077 33.80709134615385 23.48682892628205 48 20.936247996794872 24.34845753205128 27.384314903846153 27.330979567307693 49 20.150240384615383 21.806891025641026 33.13551682692308 24.90735176282051 50 21.817658253205128 21.416766826923077 30.349559294871796 26.416015625 51 19.425831330128204 21.55724158653846 27.518529647435898 31.498397435897434 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 125.0 1 327.5 2 530.0 3 2999.0 4 5468.0 5 3687.0 6 1906.0 7 1867.0 8 1828.0 9 1807.5 10 1787.0 11 1712.0 12 1637.0 13 1539.0 14 1441.0 15 1408.0 16 1375.0 17 1347.0 18 1319.0 19 1212.5 20 1106.0 21 1130.5 22 1155.0 23 1206.5 24 1258.0 25 1561.5 26 2062.0 27 2259.0 28 2739.5 29 3220.0 30 3794.5 31 4369.0 32 4900.0 33 5431.0 34 6375.5 35 7320.0 36 7720.0 37 8120.0 38 9017.0 39 9914.0 40 11149.5 41 12385.0 42 13804.5 43 15224.0 44 17950.0 45 20676.0 46 40225.0 47 59774.0 48 49752.0 49 39730.0 50 40172.0 51 40614.0 52 35193.5 53 29773.0 54 27221.5 55 24670.0 56 21978.0 57 19286.0 58 17935.5 59 16585.0 60 15772.0 61 14959.0 62 13891.5 63 12824.0 64 11034.0 65 9244.0 66 7538.0 67 5832.0 68 5076.5 69 4321.0 70 3894.0 71 3467.0 72 2985.5 73 2504.0 74 2098.0 75 1351.5 76 1011.0 77 883.0 78 755.0 79 577.5 80 400.0 81 262.5 82 125.0 83 78.5 84 32.0 85 23.5 86 15.0 87 19.5 88 24.0 89 13.5 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 399360.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.556347984837245 #Duplication Level Percentage of deduplicated Percentage of total 1 73.41459139611295 26.103547588448308 2 9.908166913053979 7.045964613047957 3 3.567819937836922 3.805759417709099 4 2.039406735952683 2.900554223446187 5 1.4248434990477283 2.533111563803707 6 1.1276200534192589 2.4056430608433557 7 0.9488299631202055 2.361584984299962 8 0.7983968098570221 2.271045984100817 9 0.7007135532929456 2.2423333444718194 >10 5.982741831200461 34.77257722549276 >50 0.048025307993468096 1.2061212818447096 >100 0.030368944760575417 2.1505772762269606 >500 7.062545293157074E-4 0.20993491393341185 >1k 0.005650036234525659 3.873751175044032 >5k 0.002118763587947122 6.117493347286897 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGC 8975 2.247345753205128 No Hit GAATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTC 8235 2.062049278846154 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCG 7151 1.790614983974359 No Hit GCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC 3536 0.8854166666666666 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2928 0.7331730769230769 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACCCGTAAT 1919 0.4805188301282052 No Hit GAATGACTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCT 1611 0.4033954326923077 No Hit GAACTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCT 1598 0.40014022435897434 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACCCGTAATCGTA 1377 0.3448016826923077 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTC 1270 0.3180088141025641 No Hit CCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC 1187 0.2972255608974359 No Hit CTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGCT 836 0.2093349358974359 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATG 480 0.1201923076923077 No Hit GAATGCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTT 457 0.11443309294871795 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 431 0.1079226762820513 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 405 0.10141225961538462 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.50400641025641E-4 0.0 0.0 0.21459334935897437 0.0 2 2.50400641025641E-4 0.0 0.0 1.6063201121794872 0.0 3 2.50400641025641E-4 0.0 0.0 1.9739082532051282 0.0 4 2.50400641025641E-4 0.0 0.0 2.842297676282051 0.0 5 2.50400641025641E-4 0.0 0.0 6.25175280448718 0.0 6 2.50400641025641E-4 0.0 0.0 7.256860977564102 0.0 7 2.50400641025641E-4 0.0 0.0 8.477313701923077 0.0 8 2.50400641025641E-4 0.0 0.0 10.001752804487179 0.0 9 2.50400641025641E-4 0.0 0.0 10.471254006410257 0.0 10 2.50400641025641E-4 0.0 0.0 13.279246794871796 0.0 11 2.50400641025641E-4 0.0 0.0 14.82772435897436 0.0 12 2.50400641025641E-4 0.0 0.0 18.38115985576923 0.0 13 2.50400641025641E-4 0.0 0.0 19.01817908653846 0.0 14 2.50400641025641E-4 0.0 0.0 19.322916666666668 0.0 15 2.50400641025641E-4 0.0 0.0 20.057091346153847 0.0 16 2.50400641025641E-4 0.0 0.0 20.932491987179485 0.0 17 2.50400641025641E-4 0.0 0.0 21.82567107371795 0.0 18 2.50400641025641E-4 0.0 0.0 22.706330128205128 0.0 19 2.50400641025641E-4 0.0 0.0 23.820863381410255 0.0 20 2.50400641025641E-4 0.0 0.0 24.489182692307693 0.0 21 2.50400641025641E-4 0.0 0.0 25.192057291666668 0.0 22 2.50400641025641E-4 0.0 0.0 25.967798477564102 0.0 23 2.50400641025641E-4 0.0 0.0 26.677183493589745 0.0 24 2.50400641025641E-4 0.0 0.0 27.277393830128204 0.0 25 5.00801282051282E-4 0.0 0.0 27.83027844551282 0.0 26 5.00801282051282E-4 0.0 0.0 28.324569310897434 0.0 27 5.00801282051282E-4 0.0 0.0 28.83513621794872 0.0 28 5.00801282051282E-4 0.0 0.0 29.29962940705128 0.0 29 5.00801282051282E-4 0.0 0.0 29.811949118589745 0.0 30 5.00801282051282E-4 0.0 0.0 30.31700721153846 0.0 31 5.00801282051282E-4 0.0 0.0 30.828826121794872 0.0 32 5.00801282051282E-4 0.0 0.0 31.347405849358974 0.0 33 5.00801282051282E-4 0.0 0.0 31.823167067307693 0.0 34 5.00801282051282E-4 0.0 0.0 32.29792668269231 0.0 35 5.00801282051282E-4 0.0 0.0 32.810496794871796 0.0 36 0.001001602564102564 0.0 0.0 33.308543669871796 0.0 37 0.001001602564102564 0.0 0.0 33.800831330128204 0.0 38 0.001001602564102564 0.0 0.0 34.28135016025641 0.0 39 0.001001602564102564 0.0 0.0 34.74634415064103 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCAACTT 20 7.027751E-4 45.000004 9 CTAACGG 20 7.027751E-4 45.000004 2 CGAATAA 20 7.027751E-4 45.000004 22 GCTAGCG 30 2.1619308E-6 45.000004 1 TTCGGGC 30 2.1619308E-6 45.000004 4 CCGAATA 20 7.027751E-4 45.000004 21 GCGTAAG 20 7.027751E-4 45.000004 1 CCGTAAA 25 3.8862192E-5 45.0 41 CGTAAAC 25 3.8862192E-5 45.0 42 CGTTTTT 1645 0.0 43.35866 1 TACGGCT 1065 0.0 42.676056 7 TACGGGA 80 0.0 42.187504 4 ACGGCTG 1085 0.0 41.8894 8 CCGATGA 485 0.0 41.288662 18 ATGGGCG 60 3.6379788E-12 41.250004 5 GATGAAT 510 0.0 41.02941 20 TAGGGCG 100 0.0 40.5 5 TGATACC 915 0.0 40.081963 4 ATTGGGC 45 1.9228537E-8 40.0 4 GATACCT 920 0.0 39.864132 5 >>END_MODULE