SRR3551916_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551916_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	373732
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGC	8064	2.157695889032783	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTC	7675	2.0536106086714545	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCG	6518	1.7440304817355752	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3082	0.8246551004463091	No Hit
GCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	2760	0.7384971048772918	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGGAGCTT	1845	0.49366926032558095	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCT	1459	0.3903866942086843	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCT	1440	0.38530283732728265	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTA	1239	0.33152098295034943	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTC	1231	0.32938041163186454	No Hit
CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	960	0.25686855821818844	No Hit
CTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCT	587	0.1570644204938298	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATG	441	0.1179989939314803	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTT	407	0.10890156582791946	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	406	0.10863399441310886	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGT	20	7.02717E-4	45.0	45
CTCACGA	20	7.02717E-4	45.0	24
CAAACGA	25	3.885736E-5	45.0	15
CGCGGTC	20	7.02717E-4	45.0	32
ATAGCGG	40	6.7939254E-9	45.0	2
CACTAGG	25	3.885736E-5	45.0	2
AGCGCGT	20	7.02717E-4	45.0	21
CAAGCGC	20	7.02717E-4	45.0	25
TTAGTAG	25	3.885736E-5	45.0	1
CGTAAGC	25	3.885736E-5	45.0	43
ACGTAAG	20	7.02717E-4	45.0	1
TCATACT	20	7.02717E-4	45.0	40
CACCGCT	20	7.02717E-4	45.0	38
TCGCGCG	20	7.02717E-4	45.0	29
AGAGCGT	20	7.02717E-4	45.0	29
ATCACGG	30	2.161556E-6	44.999996	2
GCATATT	60	0.0	44.999996	27
CGTTTTT	1715	0.0	43.03207	1
TACGGCT	1025	0.0	42.58536	7
TGATACC	795	0.0	42.452827	4