SRR3551913_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551913_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	544546
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGC	10095	1.853837875955383	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC	9149	1.6801151785156807	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCG	8173	1.5008833046244028	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4016	0.7374950876509972	No Hit
GCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	3856	0.708112813242591	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGCAGACTT	2201	0.4041899123306387	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCT	2010	0.3691148222556037	No Hit
GAACTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCT	1791	0.3288978341590977	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTC	1676	0.30777932442805567	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGCAGACTTCGTA	1654	0.3037392616968998	No Hit
CCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	1188	0.21816338748241654	No Hit
CTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCT	1103	0.2025540542029507	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	951	0.17464089351496476	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	636	0.11679454077341493	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATG	560	0.10283796042942193	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	554	0.10173612513910671	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTGTAC	20	7.030011E-4	45.000004	8
TATTGCG	20	7.030011E-4	45.000004	1
AACGCAC	20	7.030011E-4	45.000004	38
TGCGTCG	20	7.030011E-4	45.000004	1
TCGCAAC	25	3.8880928E-5	45.0	16
CGCTAGG	45	3.8380676E-10	45.0	2
TATAGCG	25	3.8880928E-5	45.0	1
CTAGGCG	25	3.8880928E-5	45.0	1
GCGTACT	25	3.8880928E-5	45.0	20
TCGATGG	30	2.1633896E-6	44.999996	2
TACGGCT	1035	0.0	43.04348	7
CGTTTTT	2215	0.0	42.866817	1
CGAATAT	160	0.0	42.187504	14
GACCTAT	145	0.0	41.896553	33
CGAAAGG	70	0.0	41.785717	2
ATAGCGG	70	0.0	41.785717	2
ACGGCTG	1070	0.0	41.635513	8
TACGAAT	165	0.0	40.909092	12
TCGTACG	50	1.0786607E-9	40.5	30
CGGGAAC	45	1.9250365E-8	40.0	6