##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551911_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 237767 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.03092102772883 33.0 31.0 34.0 30.0 34.0 2 32.14264805460808 33.0 31.0 34.0 30.0 34.0 3 32.14038533522314 33.0 31.0 34.0 30.0 34.0 4 35.76525758410545 37.0 35.0 37.0 35.0 37.0 5 35.79704500624561 37.0 35.0 37.0 35.0 37.0 6 35.69600070657408 37.0 35.0 37.0 35.0 37.0 7 35.81261907665908 37.0 35.0 37.0 35.0 37.0 8 35.09201865692043 37.0 35.0 37.0 32.0 37.0 9 36.80498555308348 39.0 37.0 39.0 32.0 39.0 10 36.758456808556275 38.0 35.0 39.0 32.0 39.0 11 37.10865258845845 39.0 37.0 39.0 34.0 39.0 12 37.0608747218916 39.0 37.0 39.0 34.0 39.0 13 37.133412121951324 39.0 37.0 39.0 33.0 39.0 14 38.18053808981061 40.0 37.0 41.0 33.0 41.0 15 38.137538009900446 40.0 37.0 41.0 33.0 41.0 16 38.36532824151375 40.0 37.0 41.0 34.0 41.0 17 38.2272182430699 40.0 37.0 41.0 34.0 41.0 18 38.08200885741083 40.0 37.0 41.0 34.0 41.0 19 37.991453818233815 40.0 37.0 41.0 34.0 41.0 20 37.8686529249223 40.0 36.0 41.0 33.0 41.0 21 37.92343765114587 40.0 36.0 41.0 34.0 41.0 22 38.01072478518886 40.0 36.0 41.0 34.0 41.0 23 37.99982756227735 40.0 36.0 41.0 34.0 41.0 24 37.87024692240723 40.0 35.0 41.0 34.0 41.0 25 37.67736481513414 39.0 35.0 41.0 33.0 41.0 26 37.76816799639984 40.0 35.0 41.0 33.0 41.0 27 37.7602064205714 40.0 35.0 41.0 33.0 41.0 28 37.60756959544428 40.0 35.0 41.0 33.0 41.0 29 37.71508241261403 40.0 36.0 41.0 33.0 41.0 30 37.316347516686506 39.0 35.0 41.0 33.0 41.0 31 37.19220917957496 39.0 35.0 41.0 33.0 41.0 32 37.087135725310915 39.0 35.0 41.0 32.0 41.0 33 36.84581123536908 39.0 35.0 41.0 31.0 41.0 34 36.680266815832304 39.0 35.0 41.0 31.0 41.0 35 36.58418115213634 40.0 35.0 41.0 31.0 41.0 36 36.4338827507602 39.0 35.0 41.0 30.0 41.0 37 36.49327282591781 39.0 35.0 41.0 30.0 41.0 38 36.14194568632316 39.0 35.0 41.0 30.0 41.0 39 36.16877447248777 39.0 35.0 41.0 30.0 41.0 40 35.9993354838981 39.0 35.0 41.0 29.0 41.0 41 35.861372688388215 39.0 35.0 41.0 28.0 41.0 42 36.03567357959683 39.0 35.0 41.0 30.0 41.0 43 35.983471213414816 39.0 35.0 41.0 30.0 41.0 44 36.10323131469043 39.0 35.0 41.0 30.0 41.0 45 36.10367712929044 39.0 35.0 41.0 30.0 41.0 46 36.061042953816134 39.0 35.0 41.0 30.0 41.0 47 35.888441205045275 39.0 35.0 41.0 29.0 41.0 48 35.8962724011322 39.0 35.0 41.0 29.0 41.0 49 35.936076074476276 39.0 35.0 41.0 29.0 41.0 50 35.81693001972519 39.0 35.0 41.0 29.0 41.0 51 34.90815798660033 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 4.0 10 4.0 11 7.0 12 7.0 13 4.0 14 6.0 15 8.0 16 16.0 17 27.0 18 43.0 19 127.0 20 333.0 21 656.0 22 949.0 23 1150.0 24 1535.0 25 2133.0 26 2792.0 27 3261.0 28 3218.0 29 3136.0 30 3504.0 31 4243.0 32 5526.0 33 7427.0 34 14074.0 35 18498.0 36 16869.0 37 25892.0 38 49641.0 39 72654.0 40 22.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.08362808968444 14.451542897037855 17.279521548406635 20.185307464871073 2 29.77789180163774 33.16818566075192 19.992681911282894 17.061240626327457 3 26.651301484226153 32.710174246215836 26.14870860968932 14.489815659868697 4 25.554008756471674 19.741175184108812 38.1507946855535 16.554021373866014 5 31.149402566378008 22.36475204717223 25.731493436852045 20.754351949597716 6 21.522751264893785 36.68212998439649 26.888087918003762 14.90703083270597 7 62.967106452956045 5.712314997455492 24.55429054494526 6.766288004643201 8 59.84640425290305 15.039092893462927 16.75253504481278 8.361967808821241 9 56.17390134038786 7.200746949744918 16.76431127952996 19.861040430337262 10 40.7710069101263 17.957496204267205 25.147728658728923 16.123768226877573 11 32.61217915017644 20.505789281102928 26.6685452564906 20.21348631223004 12 25.64064819760522 17.085634255384473 31.72433516846324 25.549382378547065 13 24.422228484188302 21.101750873754558 36.73344072137849 17.742579920678647 14 19.710472857881875 28.912759129736255 28.476617865389226 22.900150146992644 15 15.648933619888378 22.475364537551467 40.97540869843166 20.900293144128497 16 17.775385145962225 22.956087261899256 31.160337641472534 28.10818995066599 17 18.081146668797604 25.109876475709413 33.03906765867425 23.769909196818734 18 17.517569721618223 23.425874911152516 33.06388186754259 25.99267349968667 19 19.911510007696613 24.637565347588186 29.118843237286924 26.33208140742828 20 22.502281645476454 24.2624081558837 34.821484899081874 18.41382529955797 21 21.12530334318892 29.900280526734157 29.467924480689078 19.506491649387847 22 18.446630524841545 22.41900684283353 32.491893324136655 26.642469308188264 23 19.758418956373255 26.821215728002624 31.84083577620107 21.57952953942305 24 22.919917398125055 22.05983168395951 29.53269377163357 25.487557146281866 25 17.651314101620493 31.322681448645103 27.575315329713547 23.450689120020858 26 17.387610559917903 22.36475204717223 34.11869603435296 26.128941358556908 27 22.74327387736734 25.6343395004353 28.297871445574867 23.324515176622494 28 16.585564859715603 26.173943398368994 33.4785735615119 23.761918180403505 29 21.312881939041162 20.511256818650192 33.23547843056438 24.94038281174427 30 19.159933884853658 25.914866234591006 31.571664696951217 23.353535183604116 31 24.12109333927753 24.989170069858307 25.77817779590944 25.111558794954725 32 26.907014009513514 25.52793280816934 27.46512341914563 20.09992976317151 33 23.104551935298 21.953004411882223 27.788969873868112 27.153473778951664 34 26.11632396421707 21.959733688863466 30.084494484095774 21.83944786282369 35 22.06109342339349 19.837908540714228 30.91471903165704 27.186279004235235 36 24.81799408664785 25.053518780991475 29.57937813069097 20.549109001669702 37 23.46456825379468 22.6944866192533 31.11870024015107 22.722244886800944 38 21.816315973200652 26.235768630634194 27.92649947217234 24.021415923992816 39 30.34104816900579 21.40751239658994 28.255392884630755 19.99604654977352 40 22.260027674151587 19.286948987874684 36.36290990759862 22.090113430375116 41 25.599431376095083 22.74832083510327 26.501575071393425 25.150672717408217 42 22.01272674509078 20.38382113581784 35.11462902757742 22.48882309151396 43 27.775090740094292 20.362371565440114 27.529051550467475 24.333486143998115 44 22.995621764164078 20.662244970916905 30.560170250707625 25.78196301421139 45 21.04539317903662 20.155446298266792 29.304318934082524 29.49484158861406 46 28.600268329919626 22.48882309151396 28.172959241610485 20.73794933695593 47 18.776365096922618 20.77538094016411 38.94232589047261 21.505928072440668 48 23.423351432284548 21.524854163950423 29.228614568043504 25.823179835721525 49 21.57153852300782 17.8595011082278 37.35758116138909 23.211379207375288 50 23.949496776255746 18.735989435035137 32.03219959035526 25.282314198353852 51 21.134135519226806 19.003478195039683 28.526666862937244 31.335719422796267 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 54.0 1 185.5 2 317.0 3 2407.5 4 4498.0 5 2971.5 6 1445.0 7 1422.0 8 1399.0 9 1374.0 10 1349.0 11 1341.0 12 1333.0 13 1237.5 14 1142.0 15 1084.5 16 1027.0 17 881.0 18 735.0 19 761.0 20 787.0 21 748.0 22 709.0 23 715.5 24 722.0 25 790.5 26 1049.0 27 1239.0 28 1465.0 29 1691.0 30 2056.5 31 2422.0 32 2705.0 33 2988.0 34 3287.5 35 3587.0 36 3892.0 37 4197.0 38 4501.5 39 4806.0 40 5778.0 41 6750.0 42 8075.5 43 9401.0 44 11141.0 45 12881.0 46 27630.5 47 42380.0 48 33489.5 49 24599.0 50 24363.0 51 24127.0 52 20138.0 53 16149.0 54 14298.5 55 12448.0 56 11349.5 57 10251.0 58 9298.5 59 8346.0 60 8098.0 61 7850.0 62 7290.0 63 6730.0 64 5984.0 65 5238.0 66 4524.5 67 3811.0 68 3347.0 69 2883.0 70 2554.0 71 2225.0 72 1947.0 73 1669.0 74 1401.5 75 924.5 76 715.0 77 597.5 78 480.0 79 354.5 80 229.0 81 168.5 82 108.0 83 71.5 84 35.0 85 25.5 86 16.0 87 10.0 88 4.0 89 3.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 237767.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.45487809494169 #Duplication Level Percentage of deduplicated Percentage of total 1 74.06405693950178 26.259321100068554 2 10.05693950177936 7.1313512808758155 3 3.767497034400949 4.0072844423322 4 2.01423487544484 2.856578078539074 5 1.3226571767497035 2.3447324481530236 6 0.9584816132858838 2.038970925317643 7 0.8659549228944247 2.149162835885552 8 0.7034400948991697 1.9952306249395417 9 0.6666666666666667 2.127292685696501 >10 5.479240806642942 31.69489458167029 >50 0.05575326215895611 1.2907594409653147 >100 0.03084223013048636 2.139910080036338 >500 0.0011862396204033213 0.3141731190619388 >1k 0.00948991696322657 5.680350931794572 >5k 0.0035587188612099642 7.969987424663641 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGC 6855 2.8830746066527317 No Hit GAATCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTC 6190 2.60338903211968 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCG 5905 2.4835237858912294 No Hit GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC 2706 1.1380889694532883 TruSeq Adapter, Index 14 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2695 1.1334625915286813 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCAGTGTGT 1846 0.7763903317112972 No Hit GAATGACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCT 1418 0.5963821724629574 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTA 1278 0.5375009988770518 No Hit CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC 1254 0.5274070834051824 TruSeq Adapter, Index 14 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCT 1219 0.512686790008706 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTC 1090 0.45843199434740733 No Hit CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT 747 0.3141731190619388 TruSeq Adapter, Index 15 (95% over 22bp) GAATGATACGGCCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATG 414 0.1741200418897492 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGT 348 0.14636177434210804 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTCAGTGTG 346 0.14552061471945224 No Hit TGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCTT 300 0.126173943398369 TruSeq Adapter, Index 14 (95% over 23bp) GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTAT 289 0.12154756547376212 No Hit TCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC 282 0.11860350679446685 TruSeq Adapter, Index 14 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTG 264 0.11103307019056471 No Hit GAATGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTT 261 0.10977133075658102 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCC 245 0.10304205377533468 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3221641354771688 0.0 2 0.0 0.0 0.0 2.250101990604247 0.0 3 0.0 0.0 0.0 2.7312452947633608 0.0 4 0.0 0.0 0.0 3.7709185883659213 0.0 5 0.0 0.0 0.0 7.782829408622727 0.0 6 0.0 0.0 0.0 8.743854277506971 0.0 7 0.0 0.0 0.0 10.238594926966316 0.0 8 0.0 0.0 0.0 12.014703470204024 0.0 9 0.0 0.0 0.0 12.5013143119104 0.0 10 0.0 0.0 0.0 16.051428499329177 0.0 11 0.0 0.0 0.0 17.72575672822553 0.0 12 0.0 0.0 0.0 22.078337195657934 0.0 13 0.0 0.0 0.0 22.90267362586061 0.0 14 0.0 0.0 0.0 23.278671977187752 0.0 15 0.0 0.0 0.0 24.283437146450098 0.0 16 0.0 0.0 0.0 25.27432318193862 0.0 17 0.0 0.0 0.0 26.23997442874747 0.0 18 0.0 0.0 0.0 27.236748581594586 0.0 19 0.0 0.0 0.0 28.702048644260977 0.0 20 0.0 0.0 0.0 29.48348593370821 0.0 21 0.0 0.0 0.0 30.222865242022653 0.0 22 0.0 0.0 0.0 31.04720167222533 0.0 23 0.0 0.0 0.0 31.77101952752064 0.0 24 0.0 0.0 0.0 32.35226082677579 0.0 25 0.0 0.0 0.0 32.857797759991925 0.0 26 0.0 0.0 0.0 33.309500477358085 0.0 27 0.0 0.0 0.0 33.821346107744134 0.0 28 0.0 0.0 0.0 34.25748737209116 0.0 29 0.0 0.0 0.0 34.74662169266551 0.0 30 0.0 0.0 0.0 35.252999785504294 0.0 31 0.0 0.0 0.0 35.75264860136184 0.0 32 0.0 0.0 0.0 36.239259443068214 0.0 33 0.0 0.0 0.0 36.69853259703828 0.0 34 0.0 0.0 0.0 37.153599952895064 0.0 35 0.0 0.0 0.0 37.67301601988501 0.0 36 0.0 0.0 0.0 38.14869178649686 0.0 37 0.0 0.0 0.0 38.61427363763685 0.0 38 0.0 0.0 0.0 39.04789142311591 0.0 39 0.0 0.0 0.0 39.52987588689768 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATCCGG 20 7.0219894E-4 45.000004 1 AAGGTTG 30 2.1582164E-6 45.000004 9 ATAGAGT 20 7.0219894E-4 45.000004 17 CATTCTA 30 2.1582164E-6 45.000004 45 TACGGGA 40 6.7757355E-9 45.000004 4 CCGTCAC 20 7.0219894E-4 45.000004 11 CTACGAA 40 6.7757355E-9 45.000004 11 TACTGAA 40 6.7757355E-9 45.000004 3 TTTGGGC 20 7.0219894E-4 45.000004 4 CTTTGCG 20 7.0219894E-4 45.000004 1 CGAATAT 40 6.7757355E-9 45.000004 14 CCGACTT 20 7.0219894E-4 45.000004 44 GTTCAAT 20 7.0219894E-4 45.000004 12 CTCGAGT 30 2.1582164E-6 45.000004 13 GCTACGA 40 6.7757355E-9 45.000004 10 CGGTAGT 20 7.0219894E-4 45.000004 12 AGCTACG 40 6.7757355E-9 45.000004 9 TTCGCAG 20 7.0219894E-4 45.000004 1 TAAGCCG 20 7.0219894E-4 45.000004 45 CTCTACA 20 7.0219894E-4 45.000004 21 >>END_MODULE