SRR3551907_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551907_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	319328
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC	7201	2.2550481010121257	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	6693	2.0959640244513476	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG	6173	1.9331220563182685	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3472	1.0872832949193305	No Hit
GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	2704	0.8467782342920132	TruSeq Adapter, Index 23 (95% over 23bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGTTCTACT	1901	0.5953126565788156	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCT	1502	0.47036276179977954	No Hit
GAACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT	1315	0.4118022847980759	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTC	1183	0.37046547750275577	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTA	1144	0.35825232989277483	No Hit
CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	1052	0.32944182783846077	TruSeq Adapter, Index 23 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT	639	0.20010772622507264	TruSeq Adapter, Index 22 (95% over 22bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATG	411	0.1287077863513378	No Hit
TCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	356	0.11148411664495442	TruSeq Adapter, Index 23 (95% over 23bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	346	0.10835254033470289	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCGTTCTAC	323	0.10114991482112436	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGGTT	20	7.0256257E-4	45.000004	42
GCGATAA	20	7.0256257E-4	45.000004	9
TCATCCG	20	7.0256257E-4	45.000004	1
GCTACGA	20	7.0256257E-4	45.000004	10
ATTGACG	20	7.0256257E-4	45.000004	1
TCGGTCG	20	7.0256257E-4	45.000004	15
GGCCATA	25	3.8844577E-5	45.0	1
CTCGAAT	65	0.0	44.999996	43
CGTTTTT	1715	0.0	43.68805	1
TCGAATG	65	0.0	41.53846	44
ATAAGGG	115	0.0	41.08696	3
CGAATGC	55	6.002665E-11	40.909092	45
ACGGCTG	905	0.0	40.773483	8
GTGTAAT	50	1.0768417E-9	40.5	8
TATAGCG	50	1.0768417E-9	40.5	1
TACGGCT	915	0.0	40.32787	7
GCATATC	45	1.9208528E-8	40.000004	28
AGGGTCC	85	0.0	39.705883	6
TGATACC	800	0.0	39.65625	4
ACCGGGA	40	3.447767E-7	39.375004	4