##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551907_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 319328 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.02851613388115 33.0 31.0 34.0 30.0 34.0 2 32.1335210191402 33.0 31.0 34.0 30.0 34.0 3 32.13214938871631 33.0 31.0 34.0 30.0 34.0 4 35.74818368574005 37.0 35.0 37.0 35.0 37.0 5 35.78871880949995 37.0 35.0 37.0 35.0 37.0 6 35.69036226074757 37.0 35.0 37.0 35.0 37.0 7 35.82593446237098 37.0 35.0 37.0 35.0 37.0 8 35.18035687443631 37.0 35.0 37.0 32.0 37.0 9 36.92522422086381 39.0 37.0 39.0 32.0 39.0 10 36.75215452450146 39.0 35.0 39.0 32.0 39.0 11 37.100648862611486 39.0 37.0 39.0 34.0 39.0 12 37.115370402845976 39.0 37.0 39.0 34.0 39.0 13 37.209596402445136 39.0 37.0 39.0 34.0 39.0 14 38.289686466579816 40.0 38.0 41.0 34.0 41.0 15 38.25875901893977 40.0 38.0 41.0 33.0 41.0 16 38.438887288305445 40.0 38.0 41.0 34.0 41.0 17 38.319737072852995 40.0 38.0 41.0 34.0 41.0 18 38.1866450796673 40.0 37.0 41.0 34.0 41.0 19 38.08695134783044 40.0 37.0 41.0 34.0 41.0 20 38.027100661388914 40.0 36.0 41.0 34.0 41.0 21 38.0446907255236 40.0 36.0 41.0 34.0 41.0 22 38.14498258843572 40.0 37.0 41.0 34.0 41.0 23 38.13819333099509 40.0 36.0 41.0 34.0 41.0 24 37.96201084778034 40.0 36.0 41.0 34.0 41.0 25 37.74824944884257 39.0 36.0 41.0 33.0 41.0 26 37.85095575708989 40.0 36.0 41.0 34.0 41.0 27 37.871974897284296 40.0 36.0 41.0 34.0 41.0 28 37.65614978955807 40.0 36.0 41.0 33.0 41.0 29 37.76036551758693 40.0 36.0 41.0 33.0 41.0 30 37.42979005912416 40.0 35.0 41.0 33.0 41.0 31 37.25909096602866 39.0 35.0 41.0 33.0 41.0 32 37.198773674716904 40.0 35.0 41.0 33.0 41.0 33 37.070394703878144 40.0 35.0 41.0 32.0 41.0 34 36.93251139893777 40.0 35.0 41.0 31.0 41.0 35 36.876712972241705 40.0 35.0 41.0 31.0 41.0 36 36.63570999098106 40.0 35.0 41.0 30.0 41.0 37 36.636185990580216 40.0 35.0 41.0 31.0 41.0 38 36.41875751578314 39.0 35.0 41.0 30.0 41.0 39 36.41945585730033 39.0 35.0 41.0 30.0 41.0 40 36.37571086782243 39.0 35.0 41.0 30.0 41.0 41 36.1704235143802 39.0 35.0 41.0 29.0 41.0 42 36.31734454855196 39.0 35.0 41.0 30.0 41.0 43 36.263246567792365 39.0 35.0 41.0 30.0 41.0 44 36.365708613087484 39.0 35.0 41.0 30.0 41.0 45 36.35046409960918 39.0 35.0 41.0 30.0 41.0 46 36.27076235093697 39.0 35.0 41.0 30.0 41.0 47 36.12445197414571 39.0 35.0 41.0 30.0 41.0 48 36.14667050806694 39.0 35.0 41.0 30.0 41.0 49 36.135146307245215 39.0 35.0 41.0 30.0 41.0 50 36.016359354644756 39.0 35.0 41.0 30.0 41.0 51 35.2576065988576 38.0 35.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 7.0 10 7.0 11 4.0 12 6.0 13 7.0 14 5.0 15 23.0 16 24.0 17 37.0 18 75.0 19 175.0 20 387.0 21 695.0 22 1039.0 23 1401.0 24 1995.0 25 2831.0 26 3738.0 27 4251.0 28 4238.0 29 4167.0 30 4607.0 31 5372.0 32 6785.0 33 9493.0 34 17243.0 35 22708.0 36 22420.0 37 34589.0 38 67047.0 39 103922.0 40 28.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.006613889167255 16.162065337208137 18.139029461869928 19.692291311754683 2 30.646232087383506 32.150954504459364 19.577988776430505 17.624824631726625 3 28.09650265557671 30.544455857300328 25.993962320873838 15.365079166249124 4 26.768714300030062 20.393138089988977 35.388378093997396 17.449769515983565 5 30.64779787553863 23.51845124762 24.984342118448744 20.849408758392624 6 22.84015181881952 36.50791662491232 26.066928048902692 14.585003507365467 7 66.62491231586331 5.941226575809199 21.418729331596353 6.015131776731136 8 64.53239302535324 12.785912917125962 15.100774125663893 7.5809199318569 9 59.41946838360557 7.345425393325984 16.163631125363263 17.07147509770518 10 39.27278534923339 19.532894077562883 24.14132177572903 17.052998797474697 11 30.854168754384208 21.72499749473895 26.97978254334102 20.441051207535825 12 26.306493636636937 18.32567140996092 31.648962821926048 23.718872131476097 13 24.328276881451046 20.72289307545846 35.915422387012725 19.033407656077763 14 19.65377292313859 28.31226826335304 29.23420432909109 22.799754484417274 15 16.962809399739452 22.889004409259446 39.21673013327989 20.931456057721213 16 18.620979056017635 22.741820322677622 31.522447138991883 27.11475348231286 17 18.655113237799377 25.62036526706083 32.399601663493335 23.324919831646458 18 19.158044393225772 24.297274275979557 31.958049403747868 24.5866319270468 19 20.281340815712998 25.48445485519591 29.53671460066139 24.6974897284297 20 24.139755987573906 24.828389618198216 32.81390920933961 18.217945184888265 21 22.500062631526205 28.519578615091696 29.392035775127766 19.588322978254332 22 19.48654674817116 22.977941176470587 31.89291261649464 25.642599458863614 23 21.38584778033871 26.828527407555868 30.547587433610584 21.23803737849484 24 22.691401944082575 23.024288505862312 29.087959715402345 25.19634983465277 25 18.665760597254234 30.825045094698865 27.464863713798977 23.04433059424792 26 19.084765507565887 24.276605872331896 31.393113037378495 25.24551558272372 27 25.042902595450446 25.465352239703375 27.60797675117747 21.883768413668705 28 17.80019290510071 25.522033770918927 33.354106122858 23.323667201122355 29 21.88909209339613 21.414345124762 30.432658583024352 26.263904198817517 30 22.402357450646356 25.543328489828642 29.674503958312453 22.379810101212545 31 21.580005511574306 22.925330694458363 29.473769916825333 26.020893877141997 32 23.530351237598957 26.530088185188898 28.58659434813108 21.35296622908107 33 21.511737148010823 22.41770217456659 26.52288555967532 29.547675117747268 34 20.80713247820423 22.96541487122958 30.91554765006514 25.31190500050105 35 22.148699769515982 24.103742860006015 26.40889618198216 27.338661188495838 36 19.81003858102014 24.09121655476501 27.9120528109029 28.18669205331196 37 22.024063032367973 23.233790961018137 33.345024551558275 21.39712145505562 38 19.050944483415172 24.093721815813208 28.56216805291111 28.29316564786051 39 21.295658382603467 21.78606323278886 32.82800130273574 24.090277081871932 40 20.09031466078765 23.487761799779534 30.90114239903798 25.520781140394828 41 18.82108678224271 24.680579216354346 29.37919631225574 27.11913768914721 42 20.381551257641046 24.92891321775729 30.79122407054815 23.898311454053513 43 22.538267862511276 22.248597053813008 27.369976951598357 27.843158132077363 44 21.80140795670909 22.133041887964726 30.205306142900092 25.860244012426094 45 20.530927447640043 21.05515332197615 28.978980859805592 29.434938370578212 46 24.300092694658783 24.06397184086582 28.35704980458964 23.27888565988576 47 17.999048000801686 23.062180579216353 35.47261749674316 23.466153923238803 48 20.50149063032368 23.25884357150015 29.247043791963122 26.992622006213047 49 19.446775729030964 21.077387513778937 35.15914670808698 24.31669004910312 50 20.754521996192 20.302009219360656 31.615454955406353 27.328013829040987 51 19.550117747269265 21.0084928349534 28.430015532618498 31.011373885158832 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 118.0 1 251.5 2 385.0 3 3083.5 4 5782.0 5 3857.0 6 1932.0 7 1846.0 8 1760.0 9 1719.0 10 1678.0 11 1630.5 12 1583.0 13 1500.5 14 1418.0 15 1333.0 16 1248.0 17 1171.5 18 1095.0 19 1023.0 20 951.0 21 964.5 22 978.0 23 1056.5 24 1135.0 25 1345.5 26 1888.5 27 2221.0 28 2506.5 29 2792.0 30 3228.0 31 3664.0 32 4115.5 33 4567.0 34 5057.0 35 5547.0 36 5921.0 37 6295.0 38 7043.0 39 7791.0 40 8941.0 41 10091.0 42 11458.5 43 12826.0 44 15220.5 45 17615.0 46 33162.5 47 48710.0 48 40203.5 49 31697.0 50 31445.0 51 31193.0 52 26773.5 53 22354.0 54 19806.0 55 17258.0 56 15971.5 57 14685.0 58 13749.5 59 12814.0 60 12134.5 61 11455.0 62 10581.0 63 9707.0 64 8498.0 65 7289.0 66 6311.0 67 5333.0 68 4448.0 69 3563.0 70 3331.0 71 3099.0 72 2560.5 73 2022.0 74 1672.5 75 1046.5 76 770.0 77 692.0 78 614.0 79 438.5 80 263.0 81 187.0 82 111.0 83 67.5 84 24.0 85 17.0 86 10.0 87 6.5 88 3.0 89 1.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 319328.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.79994253531645 #Duplication Level Percentage of deduplicated Percentage of total 1 70.03137988893454 22.970252360259682 2 11.038081143873635 7.2409685443843035 3 4.086962917530948 4.021564465169529 4 2.235884821117671 2.9334757459298357 5 1.5606327812347192 2.559433277161493 6 1.1935644451455905 2.348930712778333 7 1.060932902199574 2.4358976758180764 8 0.9422740853874298 2.4725228682580447 9 0.92332860838513 2.725661276662137 >10 6.819269978534588 35.24815545415629 >50 0.059826904253439527 1.346477901973248 >100 0.03589614255206371 2.2566668748154997 >500 9.971150708906588E-4 0.20898697579813102 >1k 0.00797692056712527 4.668029899165453 >5k 0.0029913452126719762 6.562975967669947 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC 7201 2.2550481010121257 No Hit GAATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC 6693 2.0959640244513476 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG 6173 1.9331220563182685 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3472 1.0872832949193305 No Hit GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC 2704 0.8467782342920132 TruSeq Adapter, Index 23 (95% over 23bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGTTCTACT 1901 0.5953126565788156 No Hit GAATGACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCT 1502 0.47036276179977954 No Hit GAACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT 1315 0.4118022847980759 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTC 1183 0.37046547750275577 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTA 1144 0.35825232989277483 No Hit CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC 1052 0.32944182783846077 TruSeq Adapter, Index 23 (95% over 23bp) CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT 639 0.20010772622507264 TruSeq Adapter, Index 22 (95% over 22bp) GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATG 411 0.1287077863513378 No Hit TCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC 356 0.11148411664495442 TruSeq Adapter, Index 23 (95% over 23bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 346 0.10835254033470289 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCGTTCTAC 323 0.10114991482112436 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.20417877542839963 0.0 2 0.0 0.0 0.0 1.6093170658382603 0.0 3 0.0 0.0 0.0 1.9882377993786953 0.0 4 0.0 0.0 0.0 2.8569370678424693 0.0 5 0.0 0.0 0.0 6.265657881551258 0.0 6 0.0 0.0 0.0 7.256801783745867 0.0 7 0.0 0.0 0.0 8.580519090089187 0.0 8 0.0 0.0 0.0 10.193280889868724 0.0 9 0.0 0.0 0.0 10.68399889768514 0.0 10 0.0 0.0 0.0 13.583212245716004 0.0 11 0.0 0.0 0.0 15.087308347529813 0.0 12 0.0 0.0 0.0 18.589663292915123 0.0 13 0.0 0.0 0.0 19.22756538731336 0.0 14 0.0 0.0 0.0 19.542915121755687 0.0 15 0.0 0.0 0.0 20.29104870227478 0.0 16 0.0 0.0 0.0 21.147221665497543 0.0 17 0.0 0.0 0.0 22.022497244212847 0.0 18 0.0 0.0 0.0 22.848920232488226 0.0 19 0.0 0.0 0.0 24.027958713297927 0.0 20 3.131576310251528E-4 0.0 0.0 24.728179176270167 0.0 21 3.131576310251528E-4 0.0 0.0 25.42401543240806 0.0 22 3.131576310251528E-4 0.0 0.0 26.15774376189999 0.0 23 3.131576310251528E-4 0.0 0.0 26.83416424491432 0.0 24 3.131576310251528E-4 0.0 0.0 27.393463773925244 0.0 25 3.131576310251528E-4 0.0 0.0 27.911426495640846 0.0 26 3.131576310251528E-4 0.0 0.0 28.35892875037579 0.0 27 3.131576310251528E-4 0.0 0.0 28.878770417877544 0.0 28 3.131576310251528E-4 0.0 0.0 29.312806894478406 0.0 29 3.131576310251528E-4 0.0 0.0 29.784422286802286 0.0 30 3.131576310251528E-4 0.0 0.0 30.271069245415372 0.0 31 6.263152620503056E-4 0.0 0.0 30.784021445034572 0.0 32 6.263152620503056E-4 0.0 0.0 31.27129471890971 0.0 33 6.263152620503056E-4 0.0 0.0 31.739465377292312 0.0 34 6.263152620503056E-4 0.0 0.0 32.189159735444434 0.0 35 6.263152620503056E-4 0.0 0.0 32.64417777332398 0.0 36 6.263152620503056E-4 0.0 0.0 33.15149313558473 0.0 37 6.263152620503056E-4 0.0 0.0 33.61684537528811 0.0 38 6.263152620503056E-4 0.0 0.0 34.08877392524301 0.0 39 6.263152620503056E-4 0.0 0.0 34.57479456859405 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATAGGTT 20 7.0256257E-4 45.000004 42 GCGATAA 20 7.0256257E-4 45.000004 9 TCATCCG 20 7.0256257E-4 45.000004 1 GCTACGA 20 7.0256257E-4 45.000004 10 ATTGACG 20 7.0256257E-4 45.000004 1 TCGGTCG 20 7.0256257E-4 45.000004 15 GGCCATA 25 3.8844577E-5 45.0 1 CTCGAAT 65 0.0 44.999996 43 CGTTTTT 1715 0.0 43.68805 1 TCGAATG 65 0.0 41.53846 44 ATAAGGG 115 0.0 41.08696 3 CGAATGC 55 6.002665E-11 40.909092 45 ACGGCTG 905 0.0 40.773483 8 GTGTAAT 50 1.0768417E-9 40.5 8 TATAGCG 50 1.0768417E-9 40.5 1 TACGGCT 915 0.0 40.32787 7 GCATATC 45 1.9208528E-8 40.000004 28 AGGGTCC 85 0.0 39.705883 6 TGATACC 800 0.0 39.65625 4 ACCGGGA 40 3.447767E-7 39.375004 4 >>END_MODULE