SRR3551906_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551906_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	338301
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC	8272	2.44515978374288	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGC	8226	2.4315624251775785	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCG	6661	1.9689566392059143	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3746	1.1072979388177984	No Hit
GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	2775	0.8202754351893727	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTTTGCGT	1836	0.5427119636063742	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCT	1642	0.485366581830973	No Hit
GAACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT	1538	0.4546247276833353	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTC	1318	0.3895938823710246	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTA	1266	0.3742229552972058	No Hit
CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	1236	0.36535511275461796	No Hit
CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT	658	0.19450134643409273	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATG	471	0.13922512791862868	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTT	440	0.13006169062462128	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	378	0.11173481603660645	No Hit
TGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCTT	349	0.10316256824543822	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCACTTTGCG	344	0.10168459448834026	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGTAC	30	2.1609449E-6	45.000004	18
ACAACAT	20	7.026223E-4	45.0	36
CCCTCGT	35	1.2085366E-7	45.0	14
CAGCACG	20	7.026223E-4	45.0	1
ACGATAG	20	7.026223E-4	45.0	1
ATATCAC	20	7.026223E-4	45.0	30
CGAATGC	90	0.0	45.0	45
GCGATTA	35	1.2085366E-7	45.0	9
GTATATG	20	7.026223E-4	45.0	1
GTAGTAG	40	6.7902874E-9	45.0	1
CATACGG	25	3.8849517E-5	44.999996	2
TTACGGG	65	0.0	44.999996	3
TTTGCGG	25	3.8849517E-5	44.999996	2
CGTTTTT	1925	0.0	44.18182	1
CGTCGAA	105	0.0	42.857147	42
TACGGCT	990	0.0	42.045452	7
CTTGCGG	65	0.0	41.53846	2
GATGAAT	505	0.0	41.435646	20
CCGATGA	480	0.0	41.250004	18
ACGGCTG	1020	0.0	41.25	8