##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551906_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 338301 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.03062361624707 33.0 31.0 34.0 30.0 34.0 2 32.141498251557046 33.0 31.0 34.0 30.0 34.0 3 32.14651745043615 33.0 31.0 34.0 30.0 34.0 4 35.759708070623496 37.0 35.0 37.0 35.0 37.0 5 35.79162343593427 37.0 35.0 37.0 35.0 37.0 6 35.69611972769812 37.0 35.0 37.0 35.0 37.0 7 35.83108533524879 37.0 35.0 37.0 35.0 37.0 8 35.166378461784035 37.0 35.0 37.0 32.0 37.0 9 36.9366156174531 39.0 37.0 39.0 32.0 39.0 10 36.77766840771975 39.0 35.0 39.0 33.0 39.0 11 37.084546010801034 39.0 37.0 39.0 34.0 39.0 12 37.07138613246783 39.0 37.0 39.0 33.0 39.0 13 37.16196818809285 39.0 37.0 39.0 34.0 39.0 14 38.25549436744201 40.0 38.0 41.0 34.0 41.0 15 38.21507769708041 40.0 37.0 41.0 33.0 41.0 16 38.392975486327266 40.0 38.0 41.0 34.0 41.0 17 38.28265952509747 40.0 37.0 41.0 34.0 41.0 18 38.133295497205154 40.0 37.0 41.0 34.0 41.0 19 38.04509002338155 40.0 37.0 41.0 34.0 41.0 20 37.959896660074904 40.0 36.0 41.0 34.0 41.0 21 37.965799687260755 40.0 36.0 41.0 34.0 41.0 22 38.0517024779708 40.0 36.0 41.0 34.0 41.0 23 38.05605067676419 40.0 36.0 41.0 34.0 41.0 24 37.90847499711795 40.0 36.0 41.0 34.0 41.0 25 37.72348588978454 39.0 35.0 41.0 33.0 41.0 26 37.79258116292887 40.0 36.0 41.0 33.0 41.0 27 37.830609427699 40.0 36.0 41.0 34.0 41.0 28 37.65468916733914 40.0 35.0 41.0 33.0 41.0 29 37.69976736693063 40.0 36.0 41.0 33.0 41.0 30 37.402629610908626 40.0 35.0 41.0 33.0 41.0 31 37.30921280161749 39.0 35.0 41.0 33.0 41.0 32 37.223082402948855 40.0 35.0 41.0 33.0 41.0 33 37.108152207649404 40.0 35.0 41.0 32.0 41.0 34 36.887195130963256 40.0 35.0 41.0 31.0 41.0 35 36.81017200658585 40.0 35.0 41.0 31.0 41.0 36 36.649752734990436 40.0 35.0 41.0 31.0 41.0 37 36.66171545458039 40.0 35.0 41.0 31.0 41.0 38 36.43324140336564 39.0 35.0 41.0 30.0 41.0 39 36.35919491813503 39.0 35.0 41.0 30.0 41.0 40 36.23798333436792 39.0 35.0 41.0 30.0 41.0 41 36.055654579797284 39.0 35.0 41.0 29.0 41.0 42 36.23323608266011 39.0 35.0 41.0 30.0 41.0 43 36.14112580217026 39.0 35.0 41.0 30.0 41.0 44 36.23091861980899 39.0 35.0 41.0 30.0 41.0 45 36.24763154705425 39.0 35.0 41.0 30.0 41.0 46 36.16686914907139 39.0 35.0 41.0 30.0 41.0 47 35.99724801286428 39.0 35.0 41.0 29.0 41.0 48 35.97746385615177 39.0 35.0 41.0 29.0 41.0 49 35.983236821647 39.0 35.0 41.0 30.0 41.0 50 35.868619956784045 39.0 35.0 41.0 29.0 41.0 51 35.00405851593699 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 4.0 11 4.0 12 4.0 13 4.0 14 14.0 15 14.0 16 24.0 17 59.0 18 91.0 19 186.0 20 419.0 21 744.0 22 1195.0 23 1606.0 24 2051.0 25 2811.0 26 4024.0 27 4720.0 28 4512.0 29 4467.0 30 4837.0 31 5752.0 32 7300.0 33 10319.0 34 18951.0 35 24857.0 36 24641.0 37 37653.0 38 69442.0 39 107565.0 40 28.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.279496661257284 15.992858430805704 17.74100579070118 19.986639117235836 2 30.39482590947115 32.643710778271426 20.082707411447203 16.878755900810223 3 27.475236549699822 30.92187135125229 26.28132934871608 15.321562750331804 4 26.234625377991787 20.589356815380384 35.78056228033615 17.395455526291677 5 31.257962583616365 23.067327616530843 25.048403640544958 20.626306159307838 6 22.284001525268916 36.51659321137094 26.534358455931255 14.665046807428888 7 66.9356578904585 5.335189668372249 21.93460852909096 5.794543912078296 8 64.05479144312314 13.240575700337864 15.381568484869982 7.323064371669016 9 59.5856943964103 7.191229112535878 15.893834189080138 17.329242301973686 10 40.573926769356284 19.780609575496378 23.771434314412314 15.874029340735026 11 31.574544562386752 21.333664399454925 26.428239940171622 20.663551097986705 12 26.22043682992365 18.10990804047283 31.28574849024981 24.38390663935371 13 24.57279168551083 20.3466735244649 35.96146626820494 19.119068521819326 14 20.333371760651016 27.410796893890353 28.869556992146045 23.386274353312583 15 17.273966083458223 22.908593235018518 38.571567923239954 21.245872758283305 16 19.041327102195975 23.805427710825565 30.144752749770177 27.008492437208286 17 18.938755723453372 25.202999695537404 32.09006180886252 23.768182772146698 18 19.090987020434465 24.044563864724015 31.769637098323685 25.094812016517835 19 21.308243250832838 24.726205361497602 28.38832873683495 25.577222650834614 20 23.64196381329053 24.457214137705773 33.53522454855292 18.365597500450782 21 22.55033239629797 28.462523019441267 29.862459762164463 19.1246848220963 22 20.14241755123396 21.65083756772815 32.0655274444947 26.141217436543197 23 21.241438837012012 27.13382461181019 30.26594659785221 21.358789953325587 24 23.422041318234356 22.957366369002752 28.706093094611013 24.914499218151885 25 18.638431456011066 30.64194312165793 27.63604009447208 23.08358532785892 26 19.59674964011339 24.481452907322176 30.614452809775912 25.30734464278852 27 23.94701759675555 25.440953470430177 27.344583669572366 23.267445263241907 28 18.093945923896175 25.262709835324166 33.26091261923553 23.38243162154413 29 20.823467858504703 24.689551612321573 29.93606285526794 24.55091767390578 30 19.599705587627586 25.55416626022388 30.935468709817588 23.910659442330942 31 23.006139502986986 23.052252284208443 29.021492694375716 24.920115518428855 32 22.344598449309935 26.19590246555582 29.388916970390273 22.07058211474397 33 22.112852164196973 21.71527722353762 29.176384344119587 26.995486268145825 34 24.64609918386289 24.259461249006062 28.268908457261432 22.825531109869612 35 21.129408426223982 21.535555614674507 26.512188849574787 30.822847109526723 36 23.966231255597826 26.148607305328685 27.517506599152824 22.36765483992066 37 20.98131545576277 21.975105010035442 32.42053674094963 24.62304279325216 38 20.87697050851165 21.78799353238684 31.412854233360232 25.92218172574128 39 25.90562841966178 21.881401473835428 31.215988128914784 20.996981977588007 40 21.380663964930637 21.12704366821263 32.69987378104114 24.79241858581559 41 24.568948953742378 24.05845681804074 25.94198657408639 25.430607654130494 42 21.265382011876994 21.314746335364067 30.951726421145665 26.468145231613267 43 26.60618798052622 21.97569619953828 27.35492948587205 24.063186334063452 44 22.708179993556037 21.398104055264394 30.136771691481844 25.756944259697722 45 20.953233954377907 19.64049766332349 29.48114253283319 29.925125849465417 46 26.279851374958984 23.411695501934666 27.45779645936607 22.850656663740278 47 18.944076428978924 22.053733213913056 36.344261471293315 22.657928885814705 48 21.75902524674772 22.77114167560841 28.681558730243182 26.788274347400687 49 20.6514317131785 19.527580468281204 35.484671934165135 24.336315884375157 50 22.967120995799597 19.680698549516553 31.5978965477489 25.75428390693495 51 20.69458854688576 20.189712711461095 28.076771868838694 31.03892687281445 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 82.0 1 234.5 2 387.0 3 3406.0 4 6425.0 5 4253.0 6 2081.0 7 2054.5 8 2028.0 9 1911.0 10 1794.0 11 1737.5 12 1681.0 13 1578.5 14 1476.0 15 1387.5 16 1299.0 17 1212.5 18 1126.0 19 1080.0 20 1034.0 21 1032.5 22 1031.0 23 1032.5 24 1034.0 25 1313.0 26 1839.5 27 2087.0 28 2387.5 29 2688.0 30 3099.0 31 3510.0 32 4024.5 33 4539.0 34 4957.0 35 5375.0 36 5590.5 37 5806.0 38 6556.0 39 7306.0 40 8467.0 41 9628.0 42 11322.0 43 13016.0 44 15329.0 45 17642.0 46 35458.5 47 53275.0 48 42955.5 49 32636.0 50 32565.0 51 32494.0 52 27882.0 53 23270.0 54 21201.0 55 19132.0 56 17327.0 57 15522.0 58 14621.0 59 13720.0 60 13275.5 61 12831.0 62 11892.0 63 10953.0 64 10029.0 65 9105.0 66 7646.0 67 6187.0 68 5389.5 69 4592.0 70 3988.5 71 3385.0 72 3009.0 73 2633.0 74 2154.0 75 1294.5 76 914.0 77 795.5 78 677.0 79 524.0 80 371.0 81 252.5 82 134.0 83 116.5 84 99.0 85 57.0 86 15.0 87 8.5 88 2.0 89 5.5 90 9.0 91 6.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 338301.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.32404511045571 #Duplication Level Percentage of deduplicated Percentage of total 1 73.20638978376192 25.859458150952104 2 9.661853863448336 6.825915234461596 3 3.664085948042902 3.8829101195176303 4 2.0403690563328643 2.882963543515202 5 1.449511481920801 2.560130448774694 6 1.1771605425962082 2.4949243265350183 7 1.0117962167493395 2.5018514642129466 8 0.9496974702593811 2.683772502458244 9 0.830562997155394 2.6404960300733187 >10 5.903703670749691 32.20602118145774 >50 0.06543823664547994 1.5908159002834175 >100 0.02936331131527946 2.261459786710648 >500 8.389517518651276E-4 0.19499941549673783 >1k 0.0067116140149210204 4.551072984473256 >5k 0.0025168552555953827 6.863208911077434 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC 8272 2.44515978374288 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGC 8226 2.4315624251775785 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCG 6661 1.9689566392059143 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3746 1.1072979388177984 No Hit GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 2775 0.8202754351893727 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTTTGCGT 1836 0.5427119636063742 No Hit GAATGACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCT 1642 0.485366581830973 No Hit GAACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT 1538 0.4546247276833353 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTC 1318 0.3895938823710246 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTA 1266 0.3742229552972058 No Hit CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 1236 0.36535511275461796 No Hit CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT 658 0.19450134643409273 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATG 471 0.13922512791862868 No Hit GAATGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTT 440 0.13006169062462128 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 378 0.11173481603660645 No Hit TGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCTT 349 0.10316256824543822 Illumina Single End Adapter 1 (95% over 21bp) GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCACTTTGCG 344 0.10168459448834026 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.19834407820254743 0.0 2 0.0 0.0 0.0 1.592960115400191 0.0 3 0.0 0.0 0.0 1.961862365171844 0.0 4 0.0 0.0 0.0 2.857514461973213 0.0 5 0.0 0.0 0.0 6.54210303841845 0.0 6 0.0 0.0 0.0 7.510767038820458 0.0 7 0.0 0.0 0.0 8.859270294796646 0.0 8 0.0 0.0 0.0 10.42710485632617 0.0 9 0.0 0.0 0.0 10.88705028953506 0.0 10 0.0 0.0 0.0 13.840041856216802 0.0 11 0.0 0.0 0.0 15.327179050608777 0.0 12 0.0 0.0 0.0 19.070886577337934 0.0 13 0.0 0.0 0.0 19.751641289857258 0.0 14 0.0 0.0 0.0 20.066154105367705 0.0 15 0.0 0.0 0.0 20.79686433087694 0.0 16 0.0 0.0 0.0 21.596152538715522 0.0 17 0.0 0.0 0.0 22.404012994345273 0.0 18 0.0 0.0 0.0 23.231087108817295 0.0 19 0.0 0.0 0.0 24.342227779403547 0.0 20 0.0 0.0 0.0 24.979234468712775 0.0 21 0.0 0.0 0.0 25.648756580678153 0.0 22 0.0 0.0 0.0 26.324781777174763 0.0 23 0.0 0.0 0.0 26.983662478089038 0.0 24 0.0 0.0 0.0 27.54085858451497 0.0 25 0.0 0.0 0.0 28.05933177850494 0.0 26 2.955947514195938E-4 0.0 0.0 28.507453421657043 0.0 27 2.955947514195938E-4 0.0 0.0 29.001983440782027 0.0 28 2.955947514195938E-4 0.0 0.0 29.4571993579682 0.0 29 2.955947514195938E-4 0.0 0.0 29.92305668620548 0.0 30 2.955947514195938E-4 0.0 0.0 30.42527216886737 0.0 31 2.955947514195938E-4 0.0 0.0 30.922166946003706 0.0 32 2.955947514195938E-4 0.0 0.0 31.402804011811966 0.0 33 2.955947514195938E-4 0.0 0.0 31.866592176789307 0.0 34 2.955947514195938E-4 0.0 0.0 32.2934309978392 0.0 35 2.955947514195938E-4 0.0 0.0 32.764904626353456 0.0 36 5.911895028391876E-4 0.0 0.0 33.236969444370544 0.0 37 5.911895028391876E-4 0.0 0.0 33.70134879885073 0.0 38 5.911895028391876E-4 0.0 0.0 34.13764665194605 0.0 39 5.911895028391876E-4 0.0 0.0 34.581334373826856 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGTAC 30 2.1609449E-6 45.000004 18 ACAACAT 20 7.026223E-4 45.0 36 CCCTCGT 35 1.2085366E-7 45.0 14 CAGCACG 20 7.026223E-4 45.0 1 ACGATAG 20 7.026223E-4 45.0 1 ATATCAC 20 7.026223E-4 45.0 30 CGAATGC 90 0.0 45.0 45 GCGATTA 35 1.2085366E-7 45.0 9 GTATATG 20 7.026223E-4 45.0 1 GTAGTAG 40 6.7902874E-9 45.0 1 CATACGG 25 3.8849517E-5 44.999996 2 TTACGGG 65 0.0 44.999996 3 TTTGCGG 25 3.8849517E-5 44.999996 2 CGTTTTT 1925 0.0 44.18182 1 CGTCGAA 105 0.0 42.857147 42 TACGGCT 990 0.0 42.045452 7 CTTGCGG 65 0.0 41.53846 2 GATGAAT 505 0.0 41.435646 20 CCGATGA 480 0.0 41.250004 18 ACGGCTG 1020 0.0 41.25 8 >>END_MODULE