##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551905_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 224827 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.987225733564028 33.0 31.0 34.0 30.0 34.0 2 32.08819225448901 33.0 31.0 34.0 30.0 34.0 3 32.09383214649486 33.0 31.0 34.0 30.0 34.0 4 35.72120341418068 37.0 35.0 37.0 35.0 37.0 5 35.76904909107892 37.0 35.0 37.0 35.0 37.0 6 35.67433181957683 37.0 35.0 37.0 35.0 37.0 7 35.790234269015734 37.0 35.0 37.0 35.0 37.0 8 34.99449354392488 37.0 35.0 37.0 32.0 37.0 9 36.74686314366157 39.0 37.0 39.0 32.0 39.0 10 36.69428049122214 38.0 35.0 39.0 32.0 39.0 11 37.07897627953938 39.0 37.0 39.0 34.0 39.0 12 37.07890956157401 39.0 37.0 39.0 34.0 39.0 13 37.09475285441695 39.0 37.0 39.0 33.0 39.0 14 38.12668407264252 40.0 37.0 41.0 33.0 41.0 15 38.071188069048645 40.0 37.0 41.0 33.0 41.0 16 38.33891392048108 40.0 37.0 41.0 34.0 41.0 17 38.18709051848755 40.0 37.0 41.0 34.0 41.0 18 38.039261298687435 39.0 37.0 41.0 34.0 41.0 19 37.94549587015794 39.0 37.0 41.0 34.0 41.0 20 37.8018254035325 40.0 35.0 41.0 33.0 41.0 21 37.878817935568236 40.0 36.0 41.0 34.0 41.0 22 37.98765717640675 40.0 36.0 41.0 34.0 41.0 23 37.934216086146236 40.0 36.0 41.0 34.0 41.0 24 37.78066246491747 40.0 35.0 41.0 33.0 41.0 25 37.59779741756996 39.0 35.0 41.0 33.0 41.0 26 37.65699404430963 39.0 35.0 41.0 33.0 41.0 27 37.685291357354764 40.0 35.0 41.0 33.0 41.0 28 37.51262971084434 40.0 35.0 41.0 33.0 41.0 29 37.51564536287901 40.0 35.0 41.0 33.0 41.0 30 37.245188522730814 39.0 35.0 41.0 33.0 41.0 31 37.094953008313055 39.0 35.0 41.0 32.0 41.0 32 36.9242395263914 39.0 35.0 41.0 32.0 41.0 33 36.80017969372006 39.0 35.0 41.0 31.0 41.0 34 36.503373705115486 39.0 35.0 41.0 30.0 41.0 35 36.45432710484061 39.0 35.0 41.0 30.0 41.0 36 36.35542439297771 39.0 35.0 41.0 30.0 41.0 37 36.36940403065468 39.0 35.0 41.0 30.0 41.0 38 36.128147420016276 39.0 35.0 41.0 30.0 41.0 39 36.041498574459474 39.0 35.0 41.0 30.0 41.0 40 35.94172408118242 39.0 35.0 41.0 29.0 41.0 41 35.65487686087525 39.0 35.0 40.0 27.0 41.0 42 35.95140263402527 39.0 35.0 41.0 29.0 41.0 43 35.865051795380445 39.0 35.0 41.0 29.0 41.0 44 36.025842091919564 39.0 35.0 41.0 29.0 41.0 45 36.01740004536822 39.0 35.0 41.0 29.0 41.0 46 35.91310652190351 39.0 35.0 41.0 29.0 41.0 47 35.67939348921615 39.0 35.0 41.0 28.0 41.0 48 35.73735360966432 39.0 35.0 41.0 28.0 41.0 49 35.74869121591268 39.0 35.0 41.0 28.0 41.0 50 35.62131772429468 38.0 35.0 41.0 28.0 41.0 51 34.83096336294128 37.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 3.0 11 3.0 12 7.0 13 4.0 14 6.0 15 6.0 16 17.0 17 29.0 18 49.0 19 119.0 20 279.0 21 505.0 22 904.0 23 1166.0 24 1543.0 25 2078.0 26 2916.0 27 3361.0 28 3218.0 29 3030.0 30 3350.0 31 4141.0 32 5202.0 33 7246.0 34 13256.0 35 17510.0 36 17301.0 37 25571.0 38 47038.0 39 64943.0 40 23.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.78106277270968 14.546295596169498 16.47088650384518 20.20175512727564 2 28.93335764832516 35.51130424726567 18.50356051541852 17.051777588990646 3 25.731784883488196 33.69568601635925 25.265648698777284 15.306880401375281 4 25.105970368327647 18.398590916571408 39.45300164126195 17.042437073838997 5 32.20342752427422 21.419580388476472 25.402642921001483 20.974349166247826 6 21.194073665529494 37.576447668651895 26.300666734867256 14.928811930951355 7 61.976541963376285 5.249369515227264 26.22861133226881 6.545477189127641 8 57.542465984957325 16.231591401388624 17.12516735089647 9.100775262757587 9 54.671814328350244 6.789664942377917 17.282621749167138 21.255898980104703 10 40.63302005542039 17.140290089713424 25.135326273089976 17.091363581776207 11 31.584729592086358 20.035849786724906 27.265408514101953 21.114012107086783 12 25.614361264438877 15.882878835727027 32.776312453575414 25.72644744625868 13 24.59179724855111 20.149270327852083 37.81707713041583 17.44185529318098 14 19.760526982969125 28.27952158770966 28.49123993114706 23.46871149817415 15 15.676497929519142 21.073981327865425 42.04299305688374 21.206527685731697 16 17.20078104498125 22.47861689209926 30.78678272627398 29.53381933664551 17 17.561502844409258 24.099418664128418 33.562250085621386 24.776828405840938 18 17.66291415177003 22.71124019801892 33.3625409759504 26.263304674260652 19 18.975923710230532 24.17280842603424 29.465767011969202 27.385500851766025 20 21.59349188487148 24.199940398617603 35.96454162533859 18.242026091172324 21 20.886726238396633 29.41417178541723 29.9826088503605 19.716493125825636 22 18.174418552931808 21.256343766540496 33.16016314766465 27.40907453286305 23 19.989147210966653 27.15198797297478 31.240909677218482 21.617955138840088 24 22.727697296143255 21.4115742326322 28.827498476606454 27.033229994618086 25 17.165198130117822 32.17807469743403 27.140423525644163 23.516303646803987 26 17.615766789575986 24.24130553714634 31.86361068732848 26.279316985949198 27 23.48249987768373 25.399529415950933 26.620468182202316 24.49750252416302 28 17.997838337922047 24.89291766558287 33.408798765272856 23.70044523122223 29 20.497538107077887 25.297228535718574 28.726531955681477 25.47870140152206 30 20.955668135944528 25.719330863285993 28.55795789651599 24.767043104253492 31 25.917705613649606 23.24275998879138 24.937396309162153 25.90213808839686 32 24.622487512620815 30.72273347951981 23.14624133222433 21.508537675635043 33 25.50805730628439 20.413473470713036 25.651278538609684 28.42719068439289 34 23.151578769453845 25.190924577564083 28.847958652652927 22.80953800032914 35 19.71160047503191 21.70068541589756 25.461799516961932 33.1259145921086 36 23.61682538129317 26.22683218652564 28.472114114407965 21.684228317773222 37 19.21566359912288 24.206167408718706 31.007396798427234 25.570772193731177 38 26.62269211438128 22.777958163387847 23.680874628047345 26.91847509418353 39 23.30013743900866 25.93416271177394 30.366014758013936 20.39968509120346 40 24.37251753570523 20.082552362483153 29.924341827271633 25.62058827453998 41 19.010617052222376 23.0488331027857 31.98281345212096 25.957736392870963 42 19.769867498120778 20.117245704474996 31.92765993408265 28.185226863321578 43 23.757377895003714 21.697127124411214 29.742424175032355 24.803070805552714 44 22.019597290361034 20.79421065975172 30.775218278943367 26.41097377094388 45 21.8412379296081 19.153393498111882 27.200024908040405 31.805343664239615 46 27.425531630987383 23.89081382574157 26.84730926445667 21.836345278814377 47 18.315860639513936 21.08999363955397 37.84687782161395 22.747267899318143 48 21.875486485164146 21.406236795402688 28.708295711813975 28.00998100761919 49 20.117245704474996 18.149955298963203 37.18103252723205 24.551766469329753 50 22.429690384162047 18.455078793917103 31.900083175063493 27.215147646857364 51 20.111908267245482 18.858944877617013 27.467341555951908 33.5618052991856 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 30.0 1 106.0 2 182.0 3 2380.0 4 4578.0 5 3006.0 6 1434.0 7 1427.0 8 1420.0 9 1404.5 10 1389.0 11 1274.5 12 1160.0 13 1132.5 14 1105.0 15 982.0 16 859.0 17 847.0 18 835.0 19 826.5 20 818.0 21 816.0 22 814.0 23 757.0 24 700.0 25 764.5 26 955.5 27 1082.0 28 1351.0 29 1620.0 30 1862.5 31 2105.0 32 2379.5 33 2654.0 34 2779.0 35 2904.0 36 3061.5 37 3219.0 38 3772.0 39 4325.0 40 4926.5 41 5528.0 42 6558.0 43 7588.0 44 9038.5 45 10489.0 46 26573.5 47 42658.0 48 32331.5 49 22005.0 50 22261.5 51 22518.0 52 18929.0 53 15340.0 54 13798.5 55 12257.0 56 11111.0 57 9965.0 58 9224.5 59 8484.0 60 7989.5 61 7495.0 62 6934.0 63 6373.0 64 5756.5 65 5140.0 66 4409.5 67 3679.0 68 3370.0 69 3061.0 70 2694.5 71 2328.0 72 2206.5 73 2085.0 74 1776.0 75 1192.0 76 917.0 77 760.0 78 603.0 79 545.0 80 487.0 81 317.5 82 148.0 83 114.0 84 80.0 85 59.0 86 38.0 87 30.5 88 23.0 89 15.0 90 7.0 91 4.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 224827.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.23853006978699 #Duplication Level Percentage of deduplicated Percentage of total 1 74.21876917789724 26.89579098595809 2 10.264624297321845 7.439497925071277 3 3.6109679161450274 3.9256850823077296 4 1.9883643861845497 2.882216103937694 5 1.3955372265998969 2.528610887482375 6 1.0580062351179518 2.3004354459206415 7 0.8640793381937797 2.1919075555871848 8 0.8235756192159462 2.3876135873360402 9 0.6959275351645924 2.269745181850934 >10 4.983184819697081 28.134965996076982 >50 0.05645972948425265 1.405080350669626 >100 0.025775093894984905 1.9570603174885577 >500 0.0024547708471414193 0.6680692265608668 >1k 0.008591697964994966 5.672806202102061 >5k 0.0036821562707121287 9.340515151649935 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGC 7949 3.5356073781173967 No Hit GAATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC 6908 3.0725846984570357 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCG 6143 2.7323230750755023 No Hit GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 2786 1.2391750101188914 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2712 1.2062608138702202 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGAGTCTT 1772 0.7881615642249373 No Hit GAATGACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCT 1579 0.7023177821169166 No Hit GAACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT 1423 0.6329310981332313 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTA 1263 0.5617652684063746 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTC 1219 0.5421946652314891 No Hit CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 926 0.41187223954418284 No Hit CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT 576 0.256196987016684 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATG 458 0.20371218759312718 No Hit GAATGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTT 344 0.1530065339127418 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCACGAGTCT 316 0.14055251371054187 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTAT 297 0.13210157143047765 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGT 291 0.12943285281572053 No Hit TCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 285 0.1267641342009634 No Hit TGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCTT 251 0.11164139538400637 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCC 237 0.1054143852829064 No Hit ACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 228 0.10141130736077072 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2642031428609553 0.0 2 0.0 0.0 0.0 2.197689779252492 0.0 3 0.0 0.0 0.0 2.6309117677147316 0.0 4 0.0 0.0 0.0 3.825163347818545 0.0 5 0.0 0.0 0.0 8.478519039083384 0.0 6 0.0 0.0 0.0 9.535776396962998 0.0 7 0.0 0.0 0.0 11.195274588906138 0.0 8 0.0 0.0 0.0 13.07538685300253 0.0 9 0.0 0.0 0.0 13.584667321985348 0.0 10 0.0 0.0 0.0 17.456978031997938 0.0 11 0.0 0.0 0.0 19.211215734764952 0.0 12 0.0 0.0 0.0 24.296903841620445 0.0 13 0.0 0.0 0.0 25.128654476553084 0.0 14 0.0 0.0 0.0 25.513839529949696 0.0 15 0.0 0.0 0.0 26.50615806820355 0.0 16 0.0 0.0 0.0 27.432203427524275 0.0 17 0.0 0.0 0.0 28.471669327972172 0.0 18 0.0 0.0 0.0 29.42662580561943 0.0 19 0.0 0.0 0.0 30.86773385758828 0.0 20 0.0 0.0 0.0 31.61586464259186 0.0 21 0.0 0.0 0.0 32.33419473639732 0.0 22 0.0 0.0 0.0 33.10589920249792 0.0 23 0.0 0.0 0.0 33.806437838871666 0.0 24 0.0 0.0 0.0 34.403341235705675 0.0 25 0.0 0.0 0.0 34.97933967005742 0.0 26 0.0 0.0 0.0 35.471273468044316 0.0 27 0.0 0.0 0.0 36.025477367042214 0.0 28 0.0 0.0 0.0 36.483607395908855 0.0 29 0.0 0.0 0.0 36.9662006787441 0.0 30 0.0 0.0 0.0 37.486156022185945 0.0 31 0.0 0.0 0.0 38.02256846375213 0.0 32 0.0 0.0 0.0 38.51983969896854 0.0 33 0.0 0.0 0.0 38.98597588367945 0.0 34 0.0 0.0 0.0 39.46056301067043 0.0 35 0.0 0.0 0.0 39.987634937084955 0.0 36 0.0 0.0 0.0 40.532498320931204 0.0 37 0.0 0.0 0.0 41.006195875050594 0.0 38 0.0 0.0 0.0 41.47722471055523 0.0 39 0.0 0.0 0.0 41.94647440031669 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATAAG 20 7.021168E-4 45.000004 12 CCTTAGG 30 2.1576889E-6 45.000004 23 CAGTTAT 20 7.021168E-4 45.000004 36 TATATGG 30 2.1576889E-6 45.000004 2 TAACGAG 20 7.021168E-4 45.000004 1 ACGGGTA 20 7.021168E-4 45.000004 5 ACGGGAC 20 7.021168E-4 45.000004 5 TCAATGG 20 7.021168E-4 45.000004 2 CCATCGA 30 2.1576889E-6 45.000004 41 ATGAGTC 20 7.021168E-4 45.000004 38 CACTAGG 20 7.021168E-4 45.000004 2 GTGTAAG 20 7.021168E-4 45.000004 1 TTGCGCG 20 7.021168E-4 45.000004 1 ACTAATC 20 7.021168E-4 45.000004 10 GCGATGT 20 7.021168E-4 45.000004 9 GTATCCA 20 7.021168E-4 45.000004 24 TTAGTCA 20 7.021168E-4 45.000004 32 TTTGCGT 20 7.021168E-4 45.000004 18 ATTGCGG 40 6.7720975E-9 45.000004 2 ACGAGAG 20 7.021168E-4 45.000004 15 >>END_MODULE