SRR3551903_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551903_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	458888
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGC	9582	2.0880912117989574	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTC	8995	1.9601732884712608	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCG	8599	1.8738777217970397	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4953	1.079348337720751	No Hit
GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	4006	0.8729798992346716	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAATCACGT	2364	0.5151583828733809	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCT	2041	0.4447708373284984	No Hit
GAACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCT	1949	0.4247223723435784	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTC	1633	0.3558602534823312	No Hit
CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	1604	0.34954062865012814	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAATCACGTCGTA	1603	0.34932271055246594	No Hit
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT	1268	0.2763201478356374	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATG	562	0.12246997088614214	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTT	466	0.10154983351057338	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATGCG	30	2.1626402E-6	45.000004	1
ACGCAAA	20	7.0288527E-4	45.0	28
GCGAAAA	25	3.88713E-5	45.0	33
CGATTAC	25	3.88713E-5	45.0	10
AGACCTT	20	7.0288527E-4	45.0	18
CATACGG	25	3.88713E-5	45.0	2
TCACTAG	20	7.0288527E-4	45.0	38
CAGTAAT	20	7.0288527E-4	45.0	36
CGATAGT	20	7.0288527E-4	45.0	10
AATACGG	35	1.2097917E-7	45.0	2
CGTTTTT	2365	0.0	43.85835	1
TACGGCT	1130	0.0	42.809734	7
CTACGAA	80	0.0	42.1875	11
TACGAAT	80	0.0	42.1875	12
CGAATAT	75	0.0	42.000004	14
AGGGATA	145	0.0	41.89655	6
CGAACAC	70	0.0	41.785713	34
ACGGCTG	1160	0.0	41.702583	8
GCGAACA	65	0.0	41.53846	33
TAAGGGT	60	3.6379788E-12	41.250004	4