SRR3551901_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551901_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	321102
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGC	9107	2.836170438053952	No Hit
GAATCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTC	7993	2.4892401791331102	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCG	7470	2.3263635854027696	No Hit
GCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	3193	0.9943880760630578	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2695	0.83929717036954	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACCTCGTTT	1957	0.6094636595225194	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCT	1752	0.5456210176205691	No Hit
GAACTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCT	1428	0.44471850066334057	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACCTCGTTTCGTA	1372	0.4272785594608567	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTC	1280	0.39862722748534735	No Hit
CCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	1126	0.3506673891785165	TruSeq Adapter, Index 15 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGCT	641	0.1996250412641466	TruSeq Adapter, Index 14 (95% over 23bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATG	482	0.1501080653499511	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTT	370	0.11522818294498322	No Hit
TCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	338	0.10526250225784953	TruSeq Adapter, Index 15 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGAACGG	25	3.8845057E-5	45.000004	2
GTAGGGT	50	2.1827873E-11	45.000004	4
CCGTATG	25	3.8845057E-5	45.000004	42
GCTACGA	25	3.8845057E-5	45.000004	10
TCGAATA	30	2.1605974E-6	45.000004	44
TAGTAGG	25	3.8845057E-5	45.000004	2
GTGCAAG	20	7.025687E-4	45.0	1
GTACCGC	20	7.025687E-4	45.0	39
CCGATCG	70	0.0	45.0	40
CGTGACT	20	7.025687E-4	45.0	21
TACGGGT	20	7.025687E-4	45.0	4
TCGATGG	20	7.025687E-4	45.0	2
TGTGCCG	20	7.025687E-4	45.0	1
GTTGTAG	20	7.025687E-4	45.0	1
CGAGGGT	20	7.025687E-4	45.0	4
GAAACGC	20	7.025687E-4	45.0	16
CACGTAG	20	7.025687E-4	45.0	1
CGATCGA	70	0.0	45.0	41
CCCATCG	35	1.2082819E-7	45.0	40
TCTATAC	20	7.025687E-4	45.0	20