SRR3551899_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551899_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	754749
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCG	17271	2.2883104184304983	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGC	13173	1.7453484535918564	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTC	13139	1.7408436447083735	No Hit
GCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	4938	0.6542572431364599	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGTTCGTT	4581	0.6069567498598872	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCT	3601	0.47711225851243255	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3461	0.45856304546279625	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCT	2947	0.39046093469484555	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTC	2003	0.2653862409887261	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTA	1810	0.23981482585601305	No Hit
CCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	1154	0.15289851328057408	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGTGTTCGT	813	0.10771793006681692	No Hit
CTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGCT	778	0.10308062680440783	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCGATCGAATGC	760	0.1006957279837403	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	755	0.10003325608911043	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGCC	65	0.0	45.000004	12
CCATACT	30	2.1645064E-6	45.000004	11
CTCGTAG	20	7.031745E-4	45.0	1
ATCCGTT	20	7.031745E-4	45.0	15
CAATGCG	25	3.8895283E-5	45.0	1
CCGCGTA	20	7.031745E-4	45.0	40
TCGAATA	20	7.031745E-4	45.0	44
ATCGAAG	25	3.8895283E-5	45.0	43
TACGGCT	1615	0.0	43.328175	7
CGATCGA	205	0.0	42.80488	41
TGATACC	1945	0.0	42.570694	4
ACGGCTG	1650	0.0	42.545452	8
CGATGAA	1580	0.0	42.294304	19
GATGAAT	1655	0.0	42.009064	20
GATCGAA	200	0.0	41.625	42
CGAATGC	240	0.0	41.250004	45
CGTTAGG	115	0.0	41.086956	2
GATACCT	2010	0.0	41.08209	5
CCGATCG	215	0.0	40.813953	40
CGAATAT	105	0.0	40.714287	14