##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551896_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 411153 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.489927107427164 28.0 25.0 31.0 16.0 33.0 2 27.646027148044645 30.0 25.0 33.0 16.0 33.0 3 27.54058221635255 30.0 25.0 33.0 16.0 34.0 4 31.909911881951487 35.0 30.0 35.0 19.0 37.0 5 33.28043331801057 35.0 32.0 35.0 28.0 37.0 6 33.065381986754325 35.0 32.0 35.0 28.0 37.0 7 33.954360055745674 35.0 33.0 36.0 31.0 37.0 8 33.714174528703424 35.0 33.0 37.0 28.0 37.0 9 35.91277942760967 39.0 35.0 39.0 30.0 39.0 10 35.129630575479204 37.0 34.0 39.0 30.0 39.0 11 35.76622814378103 37.0 35.0 39.0 31.0 39.0 12 35.73076202776095 37.0 35.0 39.0 31.0 39.0 13 35.62597378591425 37.0 35.0 39.0 30.0 39.0 14 36.57736171206339 38.0 35.0 40.0 31.0 41.0 15 36.74090423759525 38.0 35.0 40.0 31.0 41.0 16 36.48593346029337 38.0 34.0 40.0 31.0 41.0 17 36.34946114949909 38.0 35.0 40.0 31.0 41.0 18 36.32371647537535 38.0 35.0 40.0 30.0 41.0 19 36.01823408804022 37.0 34.0 40.0 30.0 41.0 20 35.895411197291516 38.0 34.0 40.0 30.0 41.0 21 36.37051413950525 38.0 35.0 40.0 31.0 41.0 22 36.68392544867726 39.0 35.0 40.0 31.0 41.0 23 36.9478101825841 39.0 35.0 40.0 31.0 41.0 24 36.950991480057304 39.0 35.0 40.0 31.0 41.0 25 36.2659131758737 38.0 35.0 40.0 30.0 41.0 26 36.35675770333671 38.0 35.0 40.0 30.0 41.0 27 36.43641418158204 38.0 35.0 40.0 30.0 41.0 28 36.376541092975124 39.0 35.0 40.0 30.0 41.0 29 36.519835681607574 39.0 35.0 40.0 30.0 41.0 30 36.16324336682452 38.0 35.0 40.0 30.0 41.0 31 36.408988867891026 38.0 35.0 40.0 30.0 41.0 32 36.08364769319451 38.0 35.0 40.0 30.0 41.0 33 36.021580774067075 39.0 35.0 40.0 29.0 41.0 34 36.03084253307163 39.0 35.0 40.0 29.0 41.0 35 35.772439943281455 39.0 35.0 40.0 27.0 41.0 36 35.72873845016332 39.0 35.0 40.0 26.0 41.0 37 35.94566742794045 39.0 35.0 40.0 29.0 41.0 38 35.60548749492281 38.0 35.0 40.0 27.0 41.0 39 35.60036288194419 39.0 35.0 40.0 27.0 41.0 40 35.28902136187745 38.0 35.0 40.0 25.0 41.0 41 35.21313233759695 38.0 34.0 40.0 25.0 41.0 42 35.245650645866625 38.0 35.0 40.0 25.0 41.0 43 35.383652800782194 38.0 35.0 40.0 27.0 41.0 44 35.74651285531177 38.0 35.0 40.0 29.0 41.0 45 35.72220073792481 38.0 35.0 40.0 28.0 41.0 46 35.565266457985224 38.0 35.0 40.0 28.0 41.0 47 35.40903507939867 38.0 35.0 40.0 27.0 41.0 48 35.5011443428602 38.0 35.0 40.0 28.0 41.0 49 35.51654736801142 38.0 35.0 40.0 28.0 41.0 50 35.34733298796312 38.0 35.0 40.0 27.0 41.0 51 34.56100283835944 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 14.0 10 22.0 11 19.0 12 21.0 13 22.0 14 28.0 15 50.0 16 74.0 17 124.0 18 264.0 19 682.0 20 1406.0 21 2184.0 22 3020.0 23 3608.0 24 4492.0 25 5078.0 26 5597.0 27 5556.0 28 6230.0 29 7028.0 30 9106.0 31 12324.0 32 17149.0 33 26436.0 34 35180.0 35 35624.0 36 48537.0 37 73313.0 38 83460.0 39 24500.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 51.50953537977346 15.876571495282779 17.799213431496305 14.814679693447452 2 28.559198157376937 34.50661919042303 19.9820991212517 16.952083530948332 3 28.51833745588625 32.92472631842647 23.79284597218067 14.764090253506602 4 25.832475988257414 20.62906022818756 36.614350375650915 16.924113407904112 5 33.68940516060931 24.189535282486084 22.572618952068936 19.54844060483567 6 22.24159862630213 40.71890512777482 23.449907941812416 13.589588304110636 7 66.87753707257396 5.576269661172361 22.575537573603988 4.970655692649695 8 64.8522569457112 16.806638891118393 12.081390625874066 6.259713537296335 9 60.671818033676026 7.128246662434666 12.098415918161852 20.101519385727453 10 44.026432982369094 21.385956079610267 20.378545213095855 14.209065724924786 11 35.770625533560505 21.513888990229916 24.674512894226723 18.04097258198286 12 27.862863702806496 18.9576629624495 27.95407062577678 25.22540270896722 13 27.14926073748702 23.27333133894195 32.955858281467 16.621549642104032 14 20.033418216576308 32.66934693410969 25.477377034826453 21.819857814487552 15 16.056796375072054 24.365382229972784 37.189805254978076 22.388016139977086 16 18.661179658180775 23.58951533857226 29.439892205577973 28.309412797668994 17 18.474144661476384 27.930721653496388 30.662308191840992 22.932825493186236 18 18.84383672258259 24.648245300411283 30.3111007337901 26.19681724321603 19 21.729623765362284 26.927688719284546 25.727162394534396 25.615525120818774 20 26.41547063988345 25.20156729976432 31.763601384399482 16.619360675952745 21 22.320644626209706 32.399374442117654 26.618314836569358 18.661666095103282 22 19.793604813779787 23.07413541917486 31.60818478765812 25.524074979387233 23 23.24536121589773 28.97753391073396 27.642264558449043 20.134840314919263 24 22.324049684667266 26.343721193813497 27.90688624429349 23.425342877225752 25 18.495061449144238 33.99026639718061 25.813504948279594 21.701167205395556 26 18.79422015648676 25.53745199475621 31.22073777888037 24.447590069876664 27 24.49501766982121 27.91102095813481 25.357713551889443 22.236247820154542 28 16.792532220365654 30.515890678166034 31.370803569474138 21.32077353199417 29 22.028539254243555 22.627099887389853 30.091717681738917 25.252643176627675 30 18.36956072313713 32.5299827558111 26.857155365520864 22.243301155530908 31 24.251799208567128 26.971711260771535 21.881392085184835 26.8950974454765 32 29.33263286416492 28.311844982281535 23.521900606343625 18.83362154720992 33 24.032172938054693 27.669261807648247 22.627829542773615 25.670735711523445 34 24.821660063285446 25.05077185378679 24.29533531313161 25.83223276979616 35 21.755891359177724 23.366970446524775 28.21796265623746 26.659175538060044 36 20.60060366822083 29.530855910087002 26.40793086758457 23.460609554107595 37 23.257278920499182 24.938648143148654 28.58911402811119 23.21495890824097 38 19.491041047979706 31.377370467927996 24.152079639452953 24.979508844639344 39 27.90007612737837 25.72570308376687 25.592176148538382 20.78204464031638 40 20.917517323234904 26.26005404314209 29.935571429613795 22.886857204009214 41 21.152223138345093 25.09649692450256 28.95831965229489 24.79296028485746 42 21.291830535104936 22.794677407193916 33.15675673046287 22.756735327238278 43 22.73606175803168 23.992528328870275 27.924154755042522 25.347255158055514 44 22.550486072094817 23.299842151218648 29.251641116567313 24.898030660119225 45 20.580902972859253 23.868000476708183 27.620861333858688 27.93023521657388 46 26.520297796683963 27.571244767762852 24.707347386496025 21.201110049057164 47 18.272030120174243 26.498408135171093 33.68454079138423 21.545020953270438 48 23.465230704871423 25.578799133169404 26.544862861270623 24.41110730068855 49 21.266535815134514 21.804048614506037 34.02456020021744 22.904855370142016 50 20.89587088018329 24.364895793050277 30.2427563461777 24.496476980588735 51 20.727563704995465 23.581975566273382 26.778839020997047 28.911621707734103 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 206.0 1 463.5 2 721.0 3 2357.5 4 3994.0 5 2786.0 6 1578.0 7 1594.0 8 1610.0 9 1588.0 10 1566.0 11 1500.5 12 1435.0 13 1352.0 14 1269.0 15 1132.5 16 996.0 17 1044.0 18 1092.0 19 1233.0 20 1374.0 21 1382.0 22 1390.0 23 1412.0 24 1434.0 25 1695.0 26 2480.5 27 3005.0 28 3511.5 29 4018.0 30 5016.5 31 6015.0 32 6217.0 33 6419.0 34 7206.5 35 7994.0 36 9165.0 37 10336.0 38 11053.5 39 11771.0 40 13941.5 41 16112.0 42 18303.5 43 20495.0 44 23054.0 45 25613.0 46 48340.0 47 71067.0 48 53497.0 49 35927.0 50 35362.5 51 34798.0 52 30376.0 53 25954.0 54 23894.0 55 21834.0 56 20628.0 57 19422.0 58 18348.5 59 17275.0 60 16696.0 61 16117.0 62 14147.5 63 12178.0 64 10470.0 65 8762.0 66 6741.0 67 4720.0 68 4177.5 69 3635.0 70 2962.0 71 2289.0 72 2050.5 73 1812.0 74 1583.0 75 1003.5 76 653.0 77 571.5 78 490.0 79 369.0 80 248.0 81 206.0 82 164.0 83 98.5 84 33.0 85 21.5 86 10.0 87 7.5 88 5.0 89 5.5 90 6.0 91 3.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 411153.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.886589264991755 #Duplication Level Percentage of deduplicated Percentage of total 1 73.47379487309954 18.28512154747085 2 10.303534666144447 5.128396704278816 3 3.622726127444362 2.7047189145978603 4 1.7882937577793523 1.7801812894001359 5 1.0988558685938765 1.367338733156078 6 0.7392239370392591 1.1038057497567701 7 0.579391239196417 1.0093350255531075 8 0.4565202997920301 0.9088986553644124 9 0.41756123350234686 0.9352507420040599 >10 6.800853768116729 41.6636554247721 >50 0.6463208560440429 9.735855801308663 >100 0.058938068789178566 2.7033271023806345 >500 0.003995801273842615 0.5688074682956494 >1k 0.006992652229224575 4.130566471036807 >5k 9.989503184606536E-4 2.464418021509953 >10k+ 0.0019979006369213073 5.510322349114103 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCG 11647 2.832765418226305 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGC 10518 2.5581717754704454 No Hit GAATCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTC 9913 2.411024606411725 No Hit GCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGC 3152 0.7666245898728696 TruSeq Adapter, Index 14 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCAGAGTTT 2975 0.723574922230897 No Hit GAATGACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCT 2424 0.5895615500798973 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2285 0.5557541839655797 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTA 2148 0.5224332547737703 No Hit GAACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCT 1949 0.47403278098420776 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTC 1682 0.4090934518293676 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCCAGAGTT 630 0.1532276305900723 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATG 598 0.14544463982994166 No Hit CCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGC 548 0.1332837167672375 TruSeq Adapter, Index 14 (95% over 21bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGT 512 0.12452785216209052 No Hit CTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGCT 464 0.11285336602189452 TruSeq Adapter, Index 15 (95% over 23bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 452 0.10993474448684554 No Hit GAATGCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTT 429 0.10434071987800161 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTAT 426 0.10361106449423937 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11820417216948435 0.0 2 0.0 0.0 0.0 1.1611249340269925 0.0 3 0.0 0.0 0.0 1.3369718815136944 0.0 4 0.0 0.0 0.0 2.062735769895878 0.0 5 0.0 0.0 0.0 5.254005200010702 0.0 6 0.0 0.0 0.0 5.723173611769828 0.0 7 0.0 0.0 0.0 6.688994121409792 0.0 8 0.0 0.0 0.0 7.62295301262547 0.0 9 0.0 0.0 0.0 7.8401470985253665 0.0 10 0.0 0.0 0.0 11.233531069942332 0.0 11 0.0 0.0 0.0 11.990183702903785 0.0 12 0.0 0.0 0.0 15.257580511391136 0.0 13 0.0 0.0 0.0 15.64016315094381 0.0 14 0.0 0.0 0.0 15.848114935316051 0.0 15 0.0 0.0 0.0 16.601119291358692 0.0 16 0.0 0.0 0.0 17.08828586925062 0.0 17 0.0 0.0 0.0 17.584208311747695 0.0 18 0.0 0.0 0.0 18.055565689658106 0.0 19 0.0 0.0 0.0 19.16780371297303 0.0 20 0.0 0.0 0.0 19.597813952470247 0.0 21 0.0 0.0 0.0 19.9582637120488 0.0 22 0.0 0.0 0.0 20.445916726863235 0.0 23 0.0 0.0 0.0 20.839930634094852 0.0 24 0.0 0.0 0.0 21.172410270629182 0.0 25 0.0 0.0 0.0 21.444814947233755 0.0 26 0.0 0.0 0.0 21.707490885388165 0.0 27 0.0 0.0 0.0 22.085938811099517 0.0 28 0.0 0.0 0.0 22.36126210923914 0.0 29 0.0 0.0 0.0 22.648746330441465 0.0 30 0.0 0.0 0.0 22.95690412085039 0.0 31 0.0 0.0 0.0 23.25776535742169 0.0 32 0.0 0.0 0.0 23.570787517055695 0.0 33 0.0 0.0 0.0 23.880647836693395 0.0 34 0.0 0.0 0.0 24.194642870172416 0.0 35 0.0 0.0 0.0 24.531500439009324 0.0 36 0.0 0.0 0.0 24.84525225402709 0.0 37 0.0 0.0 0.0 25.170192118262545 0.0 38 0.0 0.0 0.0 25.469107607143812 0.0 39 0.0 0.0 0.0 25.77142815448264 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCCG 35 1.2093915E-7 45.0 4 AATCCGG 20 7.0279953E-4 45.0 3 CTCACGA 20 7.0279953E-4 45.0 24 CTATCCC 25 3.8864207E-5 45.0 34 CCTAGAT 20 7.0279953E-4 45.0 36 CCGGCTA 20 7.0279953E-4 45.0 30 CGGTTAT 20 7.0279953E-4 45.0 31 GGATCGA 20 7.0279953E-4 45.0 9 TTCGTGC 20 7.0279953E-4 45.0 40 CTAAGCG 25 3.8864207E-5 45.0 1 CACGACG 20 7.0279953E-4 45.0 26 ACGGGTA 35 1.2093915E-7 45.0 5 ATCCGTA 20 7.0279953E-4 45.0 43 ATCCGGC 35 1.2093915E-7 45.0 6 TATTGAG 20 7.0279953E-4 45.0 1 ACGATCG 20 7.0279953E-4 45.0 40 CGGATGG 35 1.2093915E-7 45.0 2 CGTAGGC 25 3.8864207E-5 45.0 35 CGGGCTA 35 1.2093915E-7 45.0 6 AAACCGG 20 7.0279953E-4 45.0 2 >>END_MODULE