SRR3551894_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551894_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	430717
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGC	6888	1.599193902260649	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCG	6802	1.579227195583179	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTC	6462	1.5002890529048076	No Hit
GCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC	2012	0.4671280678496553	RNA PCR Primer, Index 14 (95% over 24bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTCCATAT	1880	0.4364814948098171	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1839	0.426962483486837	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCT	1387	0.3220211879261789	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCT	1280	0.29717889008327975	RNA PCR Primer, Index 14 (95% over 22bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTCCATATCGTA	1137	0.2639784359567883	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTC	1055	0.24494041331082822	No Hit
CCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC	545	0.12653319929327145	Illumina PCR Primer Index 7 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTGT	30	2.162329E-6	45.000004	10
TAGTGCG	30	2.162329E-6	45.000004	1
CGCAAGT	30	2.162329E-6	45.000004	23
TAATGCG	35	1.2095552E-7	45.000004	1
TGCACGG	60	0.0	45.000004	2
TCGCCTT	20	7.028369E-4	45.0	27
GGTCGTT	20	7.028369E-4	45.0	8
CGACGGT	20	7.028369E-4	45.0	28
ATAATGC	20	7.028369E-4	45.0	18
CGTCTAG	20	7.028369E-4	45.0	25
TAACGCG	25	3.8867303E-5	45.0	1
CATTCCG	20	7.028369E-4	45.0	26
CGTTCGG	20	7.028369E-4	45.0	2
CTAACCG	20	7.028369E-4	45.0	1
CTACGAA	50	2.1827873E-11	45.0	11
GCCTCGA	25	3.8867303E-5	45.0	14
CGAATAT	50	2.1827873E-11	45.0	14
GGACGTA	20	7.028369E-4	45.0	8
CGTAAGG	55	1.8189894E-12	45.0	2
CGGCTAT	25	3.8867303E-5	45.0	31