##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551893_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 430669 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.58963844623133 30.0 25.0 31.0 16.0 33.0 2 27.632666850876195 30.0 25.0 33.0 16.0 33.0 3 27.58386835365443 30.0 25.0 33.0 16.0 34.0 4 31.838031063299194 35.0 30.0 35.0 19.0 37.0 5 33.26060152924868 35.0 32.0 35.0 28.0 37.0 6 33.08289660969329 35.0 32.0 35.0 28.0 37.0 7 33.89155708908698 35.0 33.0 36.0 30.0 37.0 8 33.672258741632206 35.0 33.0 37.0 28.0 37.0 9 35.79596395375567 38.0 35.0 39.0 30.0 39.0 10 35.132932716308815 37.0 34.0 39.0 30.0 39.0 11 35.818110892588045 37.0 35.0 39.0 31.0 39.0 12 35.752146079703905 37.0 35.0 39.0 31.0 39.0 13 35.62424506987965 37.0 35.0 39.0 30.0 39.0 14 36.61282330513689 38.0 35.0 40.0 31.0 41.0 15 36.71565633932324 39.0 35.0 40.0 31.0 41.0 16 36.49288200450926 38.0 34.0 40.0 31.0 41.0 17 36.242176706472954 38.0 35.0 40.0 30.0 41.0 18 36.32945487137454 38.0 35.0 40.0 30.0 41.0 19 35.80860243017259 37.0 34.0 40.0 29.0 41.0 20 35.45712136234556 37.0 34.0 40.0 27.0 41.0 21 36.18682096923624 38.0 35.0 40.0 30.0 41.0 22 36.44993486877393 38.0 35.0 40.0 31.0 41.0 23 36.57168266116205 38.0 35.0 40.0 30.0 41.0 24 36.797066888956486 39.0 35.0 40.0 31.0 41.0 25 36.11301254559766 38.0 35.0 40.0 30.0 41.0 26 36.030719647803764 38.0 35.0 40.0 30.0 41.0 27 36.049581000722135 38.0 35.0 40.0 30.0 41.0 28 36.078628830958344 38.0 35.0 40.0 29.0 41.0 29 36.25064260487753 38.0 35.0 40.0 30.0 41.0 30 35.73797974778775 38.0 35.0 40.0 27.0 41.0 31 35.81180906914591 38.0 35.0 40.0 28.0 41.0 32 35.3790428380032 38.0 35.0 40.0 25.0 41.0 33 35.429538694449796 38.0 35.0 40.0 25.0 41.0 34 35.28451084243352 39.0 35.0 40.0 24.0 41.0 35 35.059419182713405 39.0 35.0 40.0 23.0 41.0 36 35.01502546038837 39.0 35.0 40.0 23.0 41.0 37 34.74999825852337 39.0 35.0 40.0 19.0 41.0 38 34.611211858759276 38.0 34.0 40.0 20.0 41.0 39 34.64221478676199 38.0 34.0 40.0 18.0 41.0 40 34.530627930034434 38.0 34.0 40.0 21.0 41.0 41 34.63666992516294 38.0 34.0 40.0 22.0 41.0 42 34.640296840496994 38.0 34.0 40.0 22.0 41.0 43 34.55491572414081 38.0 34.0 40.0 20.0 41.0 44 34.72326775319329 38.0 35.0 40.0 20.0 41.0 45 34.71943882656983 38.0 35.0 40.0 20.0 41.0 46 34.519359415235364 38.0 34.0 40.0 20.0 41.0 47 34.271951312957285 38.0 34.0 40.0 20.0 41.0 48 34.43179797013484 38.0 34.0 40.0 20.0 41.0 49 34.435039438640814 38.0 34.0 40.0 20.0 41.0 50 34.219597881435625 37.0 34.0 40.0 20.0 41.0 51 33.43758431649364 36.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 14.0 10 25.0 11 17.0 12 18.0 13 22.0 14 36.0 15 51.0 16 83.0 17 124.0 18 313.0 19 1085.0 20 2520.0 21 4633.0 22 6146.0 23 6513.0 24 6477.0 25 6914.0 26 7299.0 27 7049.0 28 6896.0 29 7441.0 30 9324.0 31 12301.0 32 17356.0 33 25508.0 34 34194.0 35 35872.0 36 47755.0 37 71902.0 38 85567.0 39 27209.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 50.37534626360384 15.720890057097215 17.67343365786718 16.230330021431772 2 28.60456638392826 35.78037889887594 19.81591431006179 15.799140407134015 3 27.30913996595994 34.33193473409974 25.059152156296367 13.299773143643959 4 25.05195405288052 20.083869514638852 38.96379818375597 15.900378248724659 5 35.15669806742533 23.400802008038657 23.008853667201492 18.43364625733452 6 21.21002440389255 42.30139619986579 23.766976494709393 12.721602901532266 7 64.61992852979898 5.625898311696453 25.42880959623284 4.325363562271722 8 63.814205340992736 18.93913887463458 12.051714890089604 5.19494089428308 9 58.6982113873996 7.766753585700386 12.363323108930524 21.171711917969485 10 44.37166362101753 20.763045401456804 20.54152957375618 14.323761403769483 11 37.35026203418402 20.92070708595232 24.542978482314727 17.186052397548927 12 26.333913051554674 18.731090466228125 27.990173427852945 26.94482305436426 13 29.455335768304664 21.37627737311021 31.70230501847126 17.46608184011387 14 18.393243999452018 33.67992588275451 26.701480719531705 21.225349398261777 15 16.16159974365464 22.5038254436702 36.38641276711349 24.948162045561673 16 18.690223814576857 22.49802052156064 28.62894705678839 30.182808607074108 17 18.73248364753442 29.62019555621603 30.233195330985048 21.414125465264508 18 18.876213518967003 24.352344840236935 29.016948050591058 27.75449359020501 19 20.864283243047442 24.915886678632546 26.274935042921594 27.944895035398414 20 28.260450601273835 23.27796985620047 32.058959432882325 16.40262010964337 21 22.337340277568156 32.81777885104338 27.467730437992984 17.377150433395485 22 19.9097218513522 21.844386292024733 34.80166903120494 23.44422282541813 23 25.447153150099034 26.55171372910518 29.143495352579357 18.857637768216424 24 20.916991935802205 28.61408645618793 27.891025358221743 22.57789624978812 25 18.617081795996462 35.067302266938185 26.588633033721955 19.726982903343405 26 18.366076963979296 23.97897225015035 34.92821633319324 22.726734452677114 27 27.947913594895386 25.904581012331978 26.18948658946894 19.9580188033037 28 17.380633386661216 31.318019174818712 31.85927011231363 19.442077326206437 29 21.35120010959693 23.13981270999306 34.70112778026744 20.80785940014257 30 21.30313535452981 32.31205403685893 28.08769611929347 18.29711448931778 31 22.172248292772405 25.762476519090065 24.147314991327445 27.91796019681008 32 28.90967309000648 28.744116711441965 24.09390970791954 18.252300490632017 33 27.92446170957278 24.95512795209314 23.123791124970687 23.996619213363395 34 21.62194167678658 24.395765657616405 26.104734726669438 27.877557938927577 35 27.630964847713674 23.298635378910486 24.50466599639166 24.56573377698418 36 20.678061341772917 34.765678514125696 25.009229826154193 19.547030317947193 37 23.18648428375388 28.078408243918183 27.252251729286296 21.48285574304164 38 22.705836733082716 28.625464103522656 22.80103745567942 25.867661707715207 39 21.2197766730366 30.466553199789164 24.57177089597812 23.741899231196115 40 22.85699690481553 22.929210135858398 26.975008649333944 27.23878430999213 41 19.110267978424268 27.317731250682076 24.739417046502073 28.832583724391586 42 19.768313948763435 24.545764844927312 28.704178847328226 26.981742358981027 43 21.757776854150173 28.953558301154715 25.33198349544546 23.956681349249656 44 23.243604717311904 23.194146780938492 29.81222237960011 23.750026122149492 45 20.717070418349127 24.317747504463984 26.4184327174698 28.546749359717094 46 26.197613480422323 28.92430149372256 24.46542472293107 20.412660302924053 47 19.56792803754159 28.103021113662695 32.752531526531975 19.57651932226373 48 21.299188007495314 27.95673707650191 26.08755215722515 24.656522758777623 49 21.40414099923607 23.715428786376545 31.79146862207403 23.088961592313353 50 22.002744567173398 26.012552563569702 28.340790723270075 23.643912145986825 51 20.310261476911503 23.402195189344948 28.490325516812216 27.79721781693133 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 242.0 1 565.0 2 888.0 3 3947.5 4 7007.0 5 4736.0 6 2465.0 7 2478.5 8 2492.0 9 2405.0 10 2318.0 11 2235.0 12 2152.0 13 1959.0 14 1766.0 15 1649.0 16 1532.0 17 1448.0 18 1364.0 19 1345.5 20 1327.0 21 1430.5 22 1534.0 23 1453.5 24 1373.0 25 1652.5 26 2509.0 27 3086.0 28 3333.0 29 3580.0 30 4918.5 31 6257.0 32 7041.0 33 7825.0 34 8821.5 35 9818.0 36 10258.5 37 10699.0 38 11095.5 39 11492.0 40 13778.5 41 16065.0 42 17965.5 43 19866.0 44 21407.5 45 22949.0 46 44089.5 47 65230.0 48 50036.5 49 34843.0 50 33528.0 51 32213.0 52 31164.0 53 30115.0 54 29407.0 55 28699.0 56 25387.0 57 22075.0 58 20310.0 59 18545.0 60 17891.5 61 17238.0 62 15307.5 63 13377.0 64 11676.0 65 9975.0 66 8217.5 67 6460.0 68 5481.0 69 4502.0 70 3563.5 71 2625.0 72 2225.5 73 1826.0 74 1575.5 75 1100.0 76 875.0 77 621.5 78 368.0 79 294.0 80 220.0 81 152.5 82 85.0 83 56.0 84 27.0 85 19.0 86 11.0 87 6.5 88 2.0 89 1.5 90 1.0 91 1.0 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 430669.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.051711301307186 #Duplication Level Percentage of deduplicated Percentage of total 1 72.73937984581164 17.49506564287584 2 9.669554300935312 4.651386569168188 3 3.463760216031195 2.499280821988071 4 1.8536512941969852 1.7833394312528128 5 1.2362293045803918 1.4866715167991666 6 0.8650047937821275 1.248290734457669 7 0.6704469738267321 1.128777794012093 8 0.6215593000409527 1.1959651872982053 9 0.540746494483121 1.1705290715251733 >10 7.616344241711627 42.02338380343703 >50 0.6345290720076837 9.45829685877536 >100 0.07283116707006432 3.393286378119099 >500 0.004988436100689337 0.7177229019838925 >1k 0.00798149776110294 4.5947703534562265 >5k 9.976872201378675E-4 2.119574186968814 >10k+ 0.001995374440275735 5.033658747882351 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCG 10545 2.4485161458103555 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGC 10432 2.4222778978751665 No Hit GAATCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTC 8833 2.05099507974802 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4170 0.9682610078737963 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAAGCCAT 3501 0.812921292222101 No Hit GCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGC 2716 0.6306467379820698 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCT 2109 0.4897032291620711 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTA 1912 0.4439604429387766 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGAGCACCCATCGAATGC 1818 0.4221339358068493 No Hit GAACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCT 1569 0.36431691159568025 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTC 1353 0.3141623845691238 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTGAAGCCA 646 0.14999918731090467 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGAGAACCCATCGAATGC 615 0.1428010838950563 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATG 578 0.1342097991729147 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 577 0.1339776022885325 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCCATCGAATGC 575 0.13351320851976808 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGAAGCCATCGT 479 0.11122230761907637 No Hit CTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGCT 451 0.1047207948563746 No Hit GAATGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTT 447 0.1037920073188458 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10727496058457887 0.0 2 0.0 0.0 0.0 0.9190352683847688 0.0 3 0.0 0.0 0.0 1.0270068196224944 0.0 4 0.0 0.0 0.0 1.5285520898880578 0.0 5 0.0 0.0 0.0 4.012594359008891 0.0 6 0.0 0.0 0.0 4.381323011407833 0.0 7 0.0 0.0 0.0 5.114136378518073 0.0 8 0.0 0.0 0.0 5.749891447956552 0.0 9 0.0 0.0 0.0 5.893853516273519 0.0 10 0.0 0.0 0.0 8.731996034077214 0.0 11 0.0 0.0 0.0 9.25374243328403 0.0 12 0.0 0.0 0.0 12.183602720418698 0.0 13 0.0 0.0 0.0 12.509839342975695 0.0 14 0.0 0.0 0.0 12.682129431187292 0.0 15 0.0 0.0 0.0 13.299773143643959 0.0 16 0.0 0.0 0.0 13.674074521268073 0.0 17 0.0 0.0 0.0 14.01888689457565 0.0 18 0.0 0.0 0.0 14.370432977530308 0.0 19 0.0 0.0 0.0 15.462919318548584 0.0 20 0.0 0.0 0.0 15.840935846322814 0.0 21 0.0 0.0 0.0 16.076847880855134 0.0 22 0.0 0.0 0.0 16.39844056572449 0.0 23 0.0 0.0 0.0 16.648516610204123 0.0 24 0.0 0.0 0.0 16.8693358472516 0.0 25 0.0 0.0 0.0 17.07668766500491 0.0 26 0.0 0.0 0.0 17.282414104567543 0.0 27 0.0 0.0 0.0 17.515307579602897 0.0 28 0.0 0.0 0.0 17.695027968114722 0.0 29 0.0 0.0 0.0 17.88612600396128 0.0 30 0.0 0.0 0.0 18.094638806136498 0.0 31 0.0 0.0 0.0 18.307795545999365 0.0 32 0.0 0.0 0.0 18.533955311387633 0.0 33 0.0 0.0 0.0 18.758257501700843 0.0 34 0.0 0.0 0.0 18.95817901915392 0.0 35 0.0 0.0 0.0 19.18201681569837 0.0 36 2.3219688438220535E-4 0.0 0.0 19.41189173123675 0.0 37 2.3219688438220535E-4 0.0 0.0 19.64548179692525 0.0 38 2.3219688438220535E-4 0.0 0.0 19.863282474475756 0.0 39 2.3219688438220535E-4 0.0 0.0 20.079689970719972 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTTCGA 20 7.028367E-4 45.000004 12 GATACCC 40 6.7975634E-9 45.000004 35 AGTCATA 25 3.8867285E-5 45.000004 35 ATAGGTA 20 7.028367E-4 45.000004 16 CGAAAGG 30 2.1623273E-6 45.000004 2 GCGCGAC 20 7.028367E-4 45.000004 9 CACGCTA 20 7.028367E-4 45.000004 41 GGCCCGT 20 7.028367E-4 45.000004 38 ATCCGGC 40 6.7975634E-9 45.000004 6 CACTATA 25 3.8867285E-5 45.000004 16 TCGTCAC 40 6.7975634E-9 45.000004 12 GTCAAGT 20 7.028367E-4 45.000004 40 CGGGATA 25 3.8867285E-5 45.000004 6 ACGCTAA 20 7.028367E-4 45.000004 42 CGTACAC 30 2.1623273E-6 45.000004 13 CGTAAGG 60 0.0 45.000004 2 ACGTAAG 20 7.028367E-4 45.000004 1 CCAACGG 30 2.1623273E-6 45.000004 2 GGTTCGA 20 7.028367E-4 45.000004 38 CCACGCA 30 2.1623273E-6 45.000004 41 >>END_MODULE