SRR3551892_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551892_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	509399
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCG	11003	2.159996387900251	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGC	9939	1.951122793723584	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTC	9824	1.9285471702928354	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3546	0.6961144407429146	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCAAAGGT	2839	0.5573234340860505	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC	2642	0.5186504096003329	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCT	2048	0.40204240683629144	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTA	1923	0.37750368571591225	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCT	1719	0.33745649284745355	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTC	1504	0.2952498925204015	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	717	0.1407541043464946	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATG	624	0.12249729583293253	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTT	568	0.11150394877100268	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGTCAAAGG	538	0.10561465570211169	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCCGTCAAAGGT	513	0.10070691147803588	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	20	7.029582E-4	45.000004	25
TATTTCG	20	7.029582E-4	45.000004	44
AACCGGT	20	7.029582E-4	45.000004	23
GATCGAC	20	7.029582E-4	45.000004	9
CGCGGTA	20	7.029582E-4	45.000004	30
AAGCGCG	20	7.029582E-4	45.000004	1
TACGCGG	25	3.8877355E-5	45.000004	2
TATAGCG	25	3.8877355E-5	45.000004	1
ACGAGCC	20	7.029582E-4	45.000004	40
TAAGACG	25	3.8877355E-5	45.000004	1
TCGAATA	50	2.1827873E-11	45.000004	44
ATCGACT	20	7.029582E-4	45.000004	10
TTTAGCG	35	1.2101555E-7	45.0	1
CGCGCGA	35	1.2101555E-7	45.0	41
CGAATGC	265	0.0	45.0	45
CGATCGA	30	2.163113E-6	44.999996	41
TCGAATG	275	0.0	44.18182	44
GATACCT	1165	0.0	43.261803	5
CGGCGAT	220	0.0	42.954544	31
TGATACC	1190	0.0	42.35294	4