##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551892_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 509399 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.442258426106058 28.0 25.0 31.0 16.0 33.0 2 27.627184191566926 30.0 25.0 33.0 16.0 33.0 3 27.584482890622088 30.0 25.0 33.0 16.0 34.0 4 31.920881273814828 35.0 30.0 35.0 19.0 37.0 5 33.27744655957314 35.0 32.0 35.0 28.0 37.0 6 33.009120551866026 35.0 32.0 35.0 28.0 37.0 7 33.912789385138176 35.0 33.0 36.0 31.0 37.0 8 33.73087304843551 35.0 33.0 37.0 28.0 37.0 9 35.87365110650001 39.0 35.0 39.0 30.0 39.0 10 35.12296647618076 37.0 34.0 39.0 30.0 39.0 11 35.771846823413476 37.0 35.0 39.0 31.0 39.0 12 35.72624406408336 37.0 35.0 39.0 31.0 39.0 13 35.73464612219498 37.0 35.0 39.0 30.0 39.0 14 36.67946540923716 38.0 36.0 40.0 31.0 41.0 15 36.83666438292969 39.0 35.0 40.0 31.0 41.0 16 36.4654602776998 38.0 34.0 40.0 31.0 41.0 17 36.32437048364838 38.0 35.0 40.0 30.0 41.0 18 36.3245746458081 38.0 35.0 40.0 30.0 41.0 19 35.8796738902118 37.0 34.0 40.0 30.0 41.0 20 35.809962328155336 38.0 34.0 40.0 29.0 41.0 21 36.3113237364031 38.0 35.0 40.0 30.0 41.0 22 36.59006986664677 39.0 35.0 40.0 31.0 41.0 23 36.85600678446561 39.0 35.0 40.0 31.0 41.0 24 36.95928339081938 39.0 35.0 40.0 31.0 41.0 25 36.1618613307054 38.0 35.0 40.0 30.0 41.0 26 36.25799226146891 38.0 35.0 40.0 30.0 41.0 27 36.31499865527808 38.0 35.0 40.0 30.0 41.0 28 36.296253035439804 39.0 35.0 40.0 30.0 41.0 29 36.429368726675946 39.0 35.0 40.0 30.0 41.0 30 35.96224570523303 38.0 35.0 40.0 29.0 41.0 31 36.283174878631485 38.0 35.0 40.0 30.0 41.0 32 35.876028417802154 38.0 35.0 40.0 28.0 41.0 33 35.84121484337425 39.0 35.0 40.0 27.0 41.0 34 35.71291070457539 39.0 35.0 40.0 27.0 41.0 35 35.583305032008305 39.0 35.0 40.0 26.0 41.0 36 35.45606292905954 39.0 35.0 40.0 25.0 41.0 37 35.23417203410293 39.0 35.0 40.0 24.0 41.0 38 35.38382486027652 39.0 35.0 40.0 24.0 41.0 39 35.33716791748708 38.0 35.0 40.0 25.0 41.0 40 35.069701746568015 38.0 35.0 40.0 23.0 41.0 41 34.975647773160134 38.0 34.0 40.0 23.0 41.0 42 34.95101089715528 38.0 34.0 40.0 23.0 41.0 43 34.93223975704703 38.0 35.0 40.0 23.0 41.0 44 35.15019267803824 38.0 35.0 40.0 24.0 41.0 45 35.162903735578595 38.0 35.0 40.0 24.0 41.0 46 35.03907545951209 38.0 35.0 40.0 24.0 41.0 47 34.86364519757597 38.0 34.0 40.0 24.0 41.0 48 35.01178840162623 38.0 34.0 40.0 24.0 41.0 49 35.004440526973944 38.0 34.0 40.0 25.0 41.0 50 34.774196651347964 38.0 34.0 40.0 24.0 41.0 51 33.927834565831496 37.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 23.0 10 32.0 11 36.0 12 48.0 13 50.0 14 56.0 15 80.0 16 106.0 17 194.0 18 574.0 19 1320.0 20 2506.0 21 3731.0 22 4665.0 23 5256.0 24 6317.0 25 7373.0 26 7629.0 27 7536.0 28 7978.0 29 9383.0 30 11465.0 31 15426.0 32 20794.0 33 30638.0 34 41039.0 35 42654.0 36 58810.0 37 88495.0 38 103329.0 39 31850.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 50.03896748913916 16.536742317907965 18.044793963081986 15.379496229870886 2 30.621968241005575 32.50752357189551 20.36242709545955 16.50808109163936 3 29.492598140161245 30.90877681346057 24.634716597402036 14.963908448976145 4 26.051287890239283 21.207933270383332 34.944120424264675 17.796658415112713 5 32.29060127719136 24.830830056596106 23.4464535658688 19.43211510034374 6 22.593291309955458 39.64063533693627 24.775078082210605 12.990995270897665 7 67.84524508293106 5.655291824287052 21.809819022023994 4.689644070757893 8 66.71018199878681 15.566186820154732 11.994330573872347 5.729300607186116 9 61.938087825064436 7.426987489178424 12.26307864758274 18.371846038174397 10 42.72289501942485 22.449592559074517 20.024774292843134 14.802738128657497 11 35.88405159805967 21.584651717023394 24.691842740170276 17.83945394474665 12 27.58014837092338 19.662190149568413 27.7536862066867 25.0039752728215 13 28.049132408976067 22.197138196188057 31.911134493785813 17.84259490105006 14 19.985119719512603 32.09429150822832 26.46216423667891 21.458424535580164 15 17.779186845675003 23.313551852280824 35.89131505951131 23.015946242532866 16 19.787828401704754 23.98198661559995 28.4382183710608 27.791966611634493 17 19.613112707327655 28.0473656210554 30.30944308881643 22.030078582800517 18 19.703807820588576 24.3035420171614 30.017334152599435 25.97531600965059 19 21.689088514111727 25.409943875037055 26.773118910716352 26.127848700134866 20 28.082308759930818 24.09702414021229 30.93351184434991 16.88715525550698 21 23.38441967887648 31.900141146723886 26.213439759402746 18.501999414996888 22 21.051867004057723 22.11390285414773 32.656326376769485 24.177903765025057 23 25.216382442839503 27.40700315469799 28.117251898806238 19.25936250365627 24 23.520266038998898 26.01928939789831 27.592712196137015 22.867732366965775 25 19.992972110271122 32.90249882704913 26.762518183192352 20.342010879487397 26 20.39069570219023 24.25956862891368 32.582906523177314 22.766829145718777 27 25.966482070047253 26.51673835245063 26.956472234927826 20.560307342574287 28 18.51318907182778 29.13629590949334 31.154556644202287 21.19595837447659 29 24.68320511033591 23.500438752333633 31.19362228822593 20.62273384910453 30 19.689084587916348 30.358520531057188 30.620594072622836 19.331800808403628 31 23.34751344231143 23.782535890333513 24.72501909112503 28.144931576230025 32 28.31650631430372 28.985530006929732 24.63294980948137 18.065013869285178 33 25.45705821958818 27.002016101327253 23.776450287495656 23.764475391588913 34 24.648065661691522 26.740138869530565 24.99219668668372 23.619598782094194 35 25.845555252366026 24.650225069150117 27.335350089026477 22.16886958945738 36 25.728750939833017 29.240340087043755 23.342605698087354 21.688303275035874 37 21.180057283190585 27.723258192497436 29.82612843762944 21.27055608668254 38 20.98237334584481 28.333781573972466 23.22148257063716 27.462362509545564 39 23.118223632162607 30.966688195304666 24.914261708405395 21.000826464127336 40 23.946061927879718 26.149050155182874 27.389924204798206 22.514963712139206 41 22.244056230970223 27.29922909153728 25.290980155045457 25.165734522447043 42 24.23149633195197 24.736405057724888 28.528324555014834 22.503774055308316 43 26.786075355467915 24.609588946974768 25.037936862852106 23.56639883470521 44 22.592506070879605 24.406800955635955 29.345562123207934 23.6551308502765 45 22.034397397717704 23.610175913183966 27.225612928176147 27.129813760922183 46 27.111556952408623 28.166133031278033 24.481987597148798 20.240322419164546 47 19.83356857787314 28.21579940282568 31.925072487382188 20.025559531918987 48 22.458622808446815 26.437232896020607 27.246814383224155 23.857329912308426 49 22.076603998044757 24.34908588356082 30.946271979332508 22.628038139061914 50 22.55736662223522 25.02929923301773 28.609989418903453 23.80334472584359 51 21.512017102507073 24.142764316380678 26.87127379519787 27.473944785914384 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 257.0 1 720.0 2 1183.0 3 3727.5 4 6272.0 5 4327.5 6 2383.0 7 2362.5 8 2342.0 9 2275.5 10 2209.0 11 2187.0 12 2165.0 13 2019.5 14 1874.0 15 1769.0 16 1664.0 17 1648.5 18 1633.0 19 1557.0 20 1481.0 21 1696.5 22 1912.0 23 1992.5 24 2073.0 25 2380.5 26 3227.5 27 3767.0 28 4382.0 29 4997.0 30 5831.0 31 6665.0 32 7722.0 33 8779.0 34 10332.0 35 11885.0 36 12925.5 37 13966.0 38 14414.5 39 14863.0 40 16462.0 41 18061.0 42 20739.5 43 23418.0 44 26150.5 45 28883.0 46 50233.5 47 71584.0 48 55486.0 49 39388.0 50 39223.5 51 39059.0 52 36458.5 53 33858.0 54 31891.5 55 29925.0 56 29000.5 57 28076.0 58 26821.5 59 25567.0 60 24187.0 61 22807.0 62 20356.0 63 17905.0 64 15140.0 65 12375.0 66 10131.0 67 7887.0 68 6865.0 69 5843.0 70 4866.0 71 3889.0 72 3157.5 73 2426.0 74 1958.0 75 1191.5 76 893.0 77 696.5 78 500.0 79 412.5 80 325.0 81 218.5 82 112.0 83 84.0 84 56.0 85 30.0 86 4.0 87 4.0 88 4.0 89 4.0 90 4.0 91 2.0 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 509399.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.998986864629 #Duplication Level Percentage of deduplicated Percentage of total 1 75.86940170223235 20.483969799858322 2 8.269094167365605 4.465143296141686 3 2.905021637131382 2.3529792306711963 4 1.5677761746543648 1.6931347338468596 5 1.0653496004420795 1.438167993428673 6 0.8084417397909694 1.309626474806052 7 0.6506044241968016 1.2295962212071272 8 0.6021964821111929 1.3006955928356712 9 0.5247593896516907 1.2751174681467055 >10 7.19365366319966 44.16742916297795 >50 0.48458721713380265 8.060455584893585 >100 0.0481668017030587 2.3821968324377494 >500 0.0036490001290195983 0.5832342947903836 >1k 0.005108600180627437 3.196163343173923 >5k 0.0014596000516078392 3.8940741107913346 >10k+ 7.298000258039196E-4 2.1680158599927672 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCG 11003 2.159996387900251 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGC 9939 1.951122793723584 No Hit GAATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTC 9824 1.9285471702928354 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3546 0.6961144407429146 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCAAAGGT 2839 0.5573234340860505 No Hit GCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC 2642 0.5186504096003329 Illumina Single End Adapter 1 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCT 2048 0.40204240683629144 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTA 1923 0.37750368571591225 No Hit GAACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCT 1719 0.33745649284745355 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTC 1504 0.2952498925204015 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 717 0.1407541043464946 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATG 624 0.12249729583293253 No Hit GAATGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTT 568 0.11150394877100268 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGTCAAAGG 538 0.10561465570211169 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCCGTCAAAGGT 513 0.10070691147803588 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06753056052328332 0.0 2 0.0 0.0 0.0 0.7707121529488672 0.0 3 0.0 0.0 0.0 0.9018470786161732 0.0 4 0.0 0.0 0.0 1.3873211372617535 0.0 5 0.0 0.0 0.0 3.793097355903722 0.0 6 0.0 0.0 0.0 4.168637943930004 0.0 7 0.0 0.0 0.0 4.826471979725127 0.0 8 0.0 0.0 0.0 5.451325974334461 0.0 9 0.0 0.0 0.0 5.613477843497926 0.0 10 0.0 0.0 0.0 8.169038415858688 0.0 11 0.0 0.0 0.0 8.698289552983026 0.0 12 0.0 0.0 0.0 11.178074554524057 0.0 13 0.0 0.0 0.0 11.496488999782096 0.0 14 0.0 0.0 0.0 11.650395858649114 0.0 15 0.0 0.0 0.0 12.194762847983604 0.0 16 0.0 0.0 0.0 12.570499745778848 0.0 17 0.0 0.0 0.0 12.923464710374382 0.0 18 0.0 0.0 0.0 13.296453271404145 0.0 19 0.0 0.0 0.0 14.140585277945187 0.0 20 0.0 0.0 0.0 14.45605507666878 0.0 21 0.0 0.0 0.0 14.714398732624131 0.0 22 0.0 0.0 0.0 15.056174040388772 0.0 23 0.0 0.0 0.0 15.32021067964405 0.0 24 0.0 0.0 0.0 15.541648099034353 0.0 25 0.0 0.0 0.0 15.763281828193616 0.0 26 0.0 0.0 0.0 15.961751004615243 0.0 27 0.0 0.0 0.0 16.257589826442533 0.0 28 0.0 0.0 0.0 16.460770437319272 0.0 29 0.0 0.0 0.0 16.655902347668526 0.0 30 0.0 0.0 0.0 16.872824642372677 0.0 31 0.0 0.0 0.0 17.084250263545865 0.0 32 0.0 0.0 0.0 17.300976248481053 0.0 33 0.0 0.0 0.0 17.526143553481653 0.0 34 0.0 0.0 0.0 17.770549215840628 0.0 35 0.0 0.0 0.0 18.00003533575841 0.0 36 0.0 0.0 0.0 18.222846923531456 0.0 37 0.0 0.0 0.0 18.43937659869768 0.0 38 0.0 0.0 0.0 18.668077479539615 0.0 39 0.0 0.0 0.0 18.906201229291774 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 20 7.029582E-4 45.000004 25 TATTTCG 20 7.029582E-4 45.000004 44 AACCGGT 20 7.029582E-4 45.000004 23 GATCGAC 20 7.029582E-4 45.000004 9 CGCGGTA 20 7.029582E-4 45.000004 30 AAGCGCG 20 7.029582E-4 45.000004 1 TACGCGG 25 3.8877355E-5 45.000004 2 TATAGCG 25 3.8877355E-5 45.000004 1 ACGAGCC 20 7.029582E-4 45.000004 40 TAAGACG 25 3.8877355E-5 45.000004 1 TCGAATA 50 2.1827873E-11 45.000004 44 ATCGACT 20 7.029582E-4 45.000004 10 TTTAGCG 35 1.2101555E-7 45.0 1 CGCGCGA 35 1.2101555E-7 45.0 41 CGAATGC 265 0.0 45.0 45 CGATCGA 30 2.163113E-6 44.999996 41 TCGAATG 275 0.0 44.18182 44 GATACCT 1165 0.0 43.261803 5 CGGCGAT 220 0.0 42.954544 31 TGATACC 1190 0.0 42.35294 4 >>END_MODULE