SRR3551891_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551891_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	365777
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCG	15096	4.12710476601864	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGC	12181	3.330171115187669	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTC	12115	3.3121273344141375	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGGACAAT	3962	1.0831736276474464	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	3626	0.9913143800731047	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCT	2781	0.7602993080483464	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCT	2483	0.6788289039496743	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2472	0.6758216071540857	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGGACAATCGTA	2090	0.5713863911618281	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTC	2017	0.5514288760638313	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGTGGACAA	732	0.20012193221553023	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATG	644	0.17606355785082167	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	592	0.16184724572622117	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTGGACAATCGT	539	0.14735754298383988	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTT	494	0.13505496518370483	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTAT	417	0.11400388761458485	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	395	0.1079892940234077	No Hit
CTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGCT	390	0.10662234093450382	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGTA	20	7.026974E-4	45.0	16
CGAACCC	45	3.8380676E-10	45.0	34
TCACCCG	25	3.885574E-5	45.0	37
CCGATCG	40	6.7939254E-9	45.0	40
GCGAACC	45	3.8380676E-10	45.0	33
CGGCCAA	25	3.885574E-5	45.0	37
CGGTTAT	20	7.026974E-4	45.0	31
TAGAACG	20	7.026974E-4	45.0	1
CCTACGC	20	7.026974E-4	45.0	28
CGATTGA	20	7.026974E-4	45.0	10
TAACGGG	20	7.026974E-4	45.0	3
TCGGATC	20	7.026974E-4	45.0	41
ACGGCTA	50	2.1827873E-11	45.0	30
CGGATCA	20	7.026974E-4	45.0	42
CACAGTC	20	7.026974E-4	45.0	18
GCCTATA	25	3.885574E-5	45.0	32
ACCGTAA	25	3.885574E-5	45.0	41
ACTCCGC	25	3.885574E-5	45.0	15
ATCGGTT	20	7.026974E-4	45.0	33
TATCGGT	20	7.026974E-4	45.0	32