SRR3551889_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551889_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	491774
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCG	12474	2.5365310081460186	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGC	11981	2.436281706637602	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTC	11398	2.317731315604322	No Hit
GCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGC	3235	0.657822495699244	TruSeq Adapter, Index 20 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACGATACT	3172	0.6450117330318399	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2809	0.5711973386148922	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCT	2468	0.5018565438595778	No Hit
GAACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCT	2395	0.4870123268005222	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACGATACTCGTA	2249	0.45732389268241097	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTC	1817	0.3694786629630684	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	676	0.137461516875638	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGACGATACTCGTATG	666	0.13542806248398653	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGACGATAC	617	0.12546413596489445	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTT	590	0.11997380910743552	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGACGATACTCGT	558	0.11346675505415088	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATGTAC	45	3.8380676E-10	45.000004	42
CGTTAGG	45	3.8380676E-10	45.000004	2
TCGGATA	35	1.2100281E-7	45.000004	17
CGAATAC	35	1.2100281E-7	45.000004	45
TTGATCG	20	7.029346E-4	45.0	1
TATCACG	25	3.8875394E-5	45.0	1
TCGCATC	20	7.029346E-4	45.0	44
GTCGATA	20	7.029346E-4	45.0	16
CCGATCG	20	7.029346E-4	45.0	40
CGACAGC	20	7.029346E-4	45.0	13
CCTCGTG	40	6.8012014E-9	45.0	15
TCGATAG	25	3.8875394E-5	45.0	17
ATCCGAT	25	3.8875394E-5	45.0	10
TGTTCGG	20	7.029346E-4	45.0	2
GTACTAT	20	7.029346E-4	45.0	34
CGTGTAC	40	6.8012014E-9	45.0	18
ACGTATG	20	7.029346E-4	45.0	1
GCGCTAG	20	7.029346E-4	45.0	1
CGATCGA	20	7.029346E-4	45.0	41
TGCGTAA	20	7.029346E-4	45.0	1