##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551889_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 491774 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.39921589998658 28.0 25.0 31.0 16.0 33.0 2 27.64586171696755 30.0 25.0 33.0 16.0 33.0 3 27.478571457620777 30.0 25.0 33.0 16.0 34.0 4 31.881703790765677 35.0 30.0 35.0 19.0 37.0 5 33.2436180033918 35.0 32.0 35.0 28.0 37.0 6 32.98940570261949 35.0 32.0 35.0 28.0 37.0 7 33.985157816395336 35.0 33.0 36.0 31.0 37.0 8 33.74995628073058 35.0 35.0 37.0 29.0 37.0 9 35.934524802043214 39.0 35.0 39.0 30.0 39.0 10 35.142101859797386 37.0 34.0 39.0 30.0 39.0 11 35.72958106772623 37.0 35.0 39.0 31.0 39.0 12 35.7406471265256 37.0 35.0 39.0 31.0 39.0 13 35.68169728371162 37.0 35.0 39.0 30.0 39.0 14 36.66178976521736 38.0 35.0 40.0 31.0 41.0 15 36.76116874824615 38.0 35.0 40.0 31.0 41.0 16 36.48348835033979 38.0 34.0 40.0 31.0 41.0 17 36.33474522849927 38.0 35.0 40.0 30.0 41.0 18 36.34417232305896 38.0 35.0 40.0 31.0 41.0 19 35.98605660323645 37.0 34.0 40.0 30.0 41.0 20 35.897786381549246 38.0 34.0 40.0 30.0 41.0 21 36.39562481953092 38.0 35.0 40.0 31.0 41.0 22 36.66290816513276 39.0 35.0 40.0 31.0 41.0 23 36.92512210893622 39.0 35.0 40.0 31.0 41.0 24 36.97154587269762 39.0 35.0 40.0 31.0 41.0 25 36.263200169183406 38.0 35.0 40.0 30.0 41.0 26 36.357902207111394 38.0 35.0 40.0 30.0 41.0 27 36.44922057693168 38.0 35.0 40.0 30.0 41.0 28 36.34637455416512 39.0 35.0 40.0 30.0 41.0 29 36.4351856747205 39.0 35.0 40.0 30.0 41.0 30 36.1302854563275 38.0 35.0 40.0 30.0 41.0 31 36.431313977558794 39.0 35.0 40.0 30.0 41.0 32 36.088866023823954 39.0 35.0 40.0 30.0 41.0 33 35.90648346598234 39.0 35.0 40.0 27.0 41.0 34 35.9583243522431 39.0 35.0 40.0 29.0 41.0 35 35.76163034239305 39.0 35.0 40.0 27.0 41.0 36 35.81021770162717 39.0 35.0 40.0 28.0 41.0 37 35.72500579534502 39.0 35.0 41.0 28.0 41.0 38 35.70191388727342 39.0 35.0 40.0 27.0 41.0 39 35.48721973914847 39.0 35.0 40.0 26.0 41.0 40 35.171513744118236 38.0 34.0 40.0 24.0 41.0 41 35.2026255963105 38.0 34.0 40.0 24.0 41.0 42 35.34048160333812 38.0 35.0 40.0 26.0 41.0 43 35.365419887997334 38.0 35.0 40.0 26.0 41.0 44 35.619101457173414 38.0 35.0 40.0 28.0 41.0 45 35.64040595883475 38.0 35.0 40.0 28.0 41.0 46 35.34149629707955 38.0 35.0 40.0 27.0 41.0 47 35.164713872632554 38.0 34.0 40.0 26.0 41.0 48 35.25054191559538 38.0 34.0 40.0 27.0 41.0 49 35.26248439323754 37.0 35.0 40.0 28.0 41.0 50 34.99679527587876 37.0 34.0 40.0 27.0 41.0 51 34.14978831739783 36.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 11.0 10 23.0 11 29.0 12 18.0 13 28.0 14 29.0 15 65.0 16 71.0 17 182.0 18 425.0 19 1103.0 20 2012.0 21 2651.0 22 3451.0 23 4508.0 24 5394.0 25 6165.0 26 6718.0 27 6744.0 28 7487.0 29 8798.0 30 11114.0 31 14724.0 32 20723.0 33 31687.0 34 42538.0 35 42631.0 36 57983.0 37 86470.0 38 98272.0 39 29716.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 51.2735524854913 15.98945857243368 17.93649115243994 14.800497789635076 2 29.24473436985282 33.637605892137444 20.813422425748414 16.304237312261325 3 28.383973125866763 32.66744480188054 23.22814951583451 15.720432556418192 4 26.09288006279307 21.024901682480163 35.87216892312322 17.01004933160354 5 33.220747741848896 24.860200010573962 22.364134744821808 19.55491750275533 6 21.7726028622904 40.55358762358319 23.8483531052882 13.825456408838205 7 68.21263425882621 5.444574133646756 21.522284626678108 4.8205069808489265 8 66.48155453521333 16.278615786926515 11.415609609292073 5.824220068568082 9 61.687279116016704 7.374525696763147 11.725508058579754 19.21268712864039 10 45.18315323705605 20.385176930866617 19.226107927625293 15.205561904452045 11 35.638728358961636 21.897253616498634 24.496008329029188 17.96800969551054 12 28.25118855409192 19.526652486711377 27.90102770784954 24.321131251347165 13 27.26699662853262 22.64251465103889 32.01755277830873 18.072935942119756 14 20.1385189131593 31.287135960827534 26.771647138726323 21.80269798728684 15 17.984480676082917 23.229979624786996 36.440926116468134 22.344613582661953 16 20.57652498912102 23.473384115467674 28.25057851777443 27.699512377636882 17 19.87457653312294 27.98114581088061 30.056082672121747 22.088194983874708 18 20.396157584581534 24.578973268208568 29.43201551932392 25.59285362788598 19 21.75796199067051 26.762496593963892 25.916376221597726 25.563165193767865 20 27.209653214688046 25.346398955617826 31.534404014852353 15.909543814841776 21 23.59295123369678 31.6747123678763 26.68237849093283 18.049957907494093 22 20.606416768678297 22.484108553929243 32.01185910601211 24.89761557138035 23 24.773371508050445 27.389410582910035 28.289010805776638 19.54820710326288 24 23.67754293638948 26.158967330521744 26.813942990072675 23.3495467430161 25 19.83167064545909 32.943791253705974 26.08779642681394 21.136741674020993 26 20.016714995099374 24.506175600987447 31.675119058754632 23.80199034515855 27 25.026536579811054 27.671857397910422 25.353922736866934 21.947683285411593 28 18.399102026540646 29.121710379157907 30.77551883588803 21.703668758413418 29 25.84500197245076 23.426207973581363 29.53755180225063 21.19123825171725 30 20.344101152155257 32.66846152907637 27.258659465526847 19.72877785324153 31 24.35732673951856 23.26922529454587 23.659648537742946 28.713799428192626 32 30.82045817794353 28.79086734963622 22.944279282759965 17.44439518966029 33 24.660921480192123 26.621374859183284 23.652531447372166 25.065172213252428 34 25.20202369381057 24.414060117045636 27.81989287762265 22.564023311521144 35 22.613232907799112 29.764688657798093 24.891921899083723 22.730156535319068 36 23.20557817208718 29.493425841951794 22.837726272637433 24.463269713323598 37 23.828628597689182 28.76138226095727 27.24889888444692 20.16109025690663 38 20.73310097727818 29.183730738103275 22.24090740868773 27.842260875930812 39 25.881197460622158 25.852729099139037 26.89426443854291 21.3718090016959 40 20.646475820193828 29.549142492283043 26.679124963906187 23.125256723616946 41 18.946914639651546 25.668091440377083 27.649286054163092 27.73570786580828 42 20.792477845514405 27.07686864291321 29.247784551440297 22.882868960132093 43 22.589238145977625 24.8418989210491 24.00370902081037 28.565153912162906 44 22.83650620000244 24.779268525786236 27.925632505988524 24.4585927682228 45 21.092005677404664 24.050071780940023 26.629305331310725 28.228617210344588 46 26.860915786519822 27.70500270449434 23.88190510275045 21.552176406235386 47 18.655113934449563 27.32088316991138 32.81304013632278 21.21096275931627 48 21.930398923082553 25.384017861863377 27.905501307511173 24.780081907542893 49 21.72868024743073 23.529507456677255 32.183075965789165 22.558736330102853 50 21.587355167210955 24.048445017426705 28.527128315039025 25.837071500323322 51 20.875239439254617 22.793600312338594 27.880896509372192 28.450263739034597 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 255.0 1 631.5 2 1008.0 3 3062.0 4 5116.0 5 3580.5 6 2045.0 7 1977.5 8 1910.0 9 1850.5 10 1791.0 11 1692.5 12 1594.0 13 1582.5 14 1571.0 15 1478.5 16 1386.0 17 1355.5 18 1325.0 19 1315.0 20 1305.0 21 1363.5 22 1422.0 23 1547.0 24 1672.0 25 1947.5 26 2937.5 27 3652.0 28 4572.5 29 5493.0 30 6195.0 31 6897.0 32 7742.5 33 8588.0 34 9513.0 35 10438.0 36 11409.5 37 12381.0 38 12809.5 39 13238.0 40 15820.0 41 18402.0 42 19931.5 43 21461.0 44 24428.0 45 27395.0 46 53096.0 47 78797.0 48 59286.0 49 39775.0 50 39135.5 51 38496.0 52 34783.0 53 31070.0 54 29937.5 55 28805.0 56 27159.0 57 25513.0 58 24652.0 59 23791.0 60 23122.5 61 22454.0 62 19757.0 63 17060.0 64 15197.5 65 13335.0 66 10476.5 67 7618.0 68 6091.0 69 4564.0 70 3811.0 71 3058.0 72 2384.0 73 1710.0 74 1621.5 75 1201.5 76 870.0 77 632.5 78 395.0 79 315.5 80 236.0 81 160.5 82 85.0 83 51.0 84 17.0 85 17.0 86 17.0 87 10.5 88 4.0 89 2.5 90 1.0 91 1.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 491774.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.93040453970015 #Duplication Level Percentage of deduplicated Percentage of total 1 75.36286487384046 19.541895734494414 2 8.843288325982359 4.586200875078605 3 3.0460786571372207 2.3695815551794412 4 1.6175068726106097 1.6777043021015334 5 1.0632063339725124 1.378468517453939 6 0.7471240301306462 1.1623937005571268 7 0.6178249643184969 1.1214315881653103 8 0.5201895038132832 1.079097941694746 9 0.43282573796820256 1.010101183263877 >10 7.162026550160759 43.67212577649288 >50 0.521747361251207 8.311736376117084 >100 0.05351254987191866 2.4364659808219087 >500 0.003934746314111667 0.6340117087448636 >1k 0.005508644839756333 3.7026528661652875 >5k 0.0 0.0 >10k+ 0.0023608477884669997 7.316131893669002 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCG 12474 2.5365310081460186 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGC 11981 2.436281706637602 No Hit GAATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTC 11398 2.317731315604322 No Hit GCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGC 3235 0.657822495699244 TruSeq Adapter, Index 20 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACGATACT 3172 0.6450117330318399 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2809 0.5711973386148922 No Hit GAATGACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCT 2468 0.5018565438595778 No Hit GAACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCT 2395 0.4870123268005222 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACGATACTCGTA 2249 0.45732389268241097 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTC 1817 0.3694786629630684 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 676 0.137461516875638 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGACGATACTCGTATG 666 0.13542806248398653 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGACGATAC 617 0.12546413596489445 No Hit GAATGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTT 590 0.11997380910743552 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGACGATACTCGT 558 0.11346675505415088 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07747461232192022 0.0 2 0.0 0.0 0.0 0.9128176764123358 0.0 3 0.0 0.0 0.0 1.0453989027480102 0.0 4 0.0 0.0 0.0 1.7164388519929887 0.0 5 0.0 0.0 0.0 4.581982780708212 0.0 6 0.0 0.0 0.0 5.007381439441695 0.0 7 0.0 0.0 0.0 5.803275488334072 0.0 8 0.0 0.0 0.0 6.541826123381878 0.0 9 0.0 0.0 0.0 6.715686473868078 0.0 10 0.0 0.0 0.0 9.722352137363911 0.0 11 0.0 0.0 0.0 10.29741303932294 0.0 12 0.0 0.0 0.0 13.294318121738847 0.0 13 0.0 0.0 0.0 13.638785295684603 0.0 14 0.0 0.0 0.0 13.819356045663252 0.0 15 0.0 0.0 0.0 14.45359047041934 0.0 16 0.0 0.0 0.0 14.867195093681245 0.0 17 0.0 0.0 0.0 15.258838409513313 0.0 18 0.0 0.0 0.0 15.641941216900445 0.0 19 0.0 0.0 0.0 16.60051161712494 0.0 20 0.0 0.0 0.0 16.96694009850053 0.0 21 0.0 0.0 0.0 17.238609605225165 0.0 22 0.0 0.0 0.0 17.61784884926816 0.0 23 0.0 0.0 0.0 17.911683008861793 0.0 24 0.0 0.0 0.0 18.18111571575561 0.0 25 0.0 0.0 0.0 18.419233225017997 0.0 26 0.0 0.0 0.0 18.655520625327895 0.0 27 0.0 0.0 0.0 18.954438420900658 0.0 28 0.0 0.0 0.0 19.19174254840638 0.0 29 0.0 0.0 0.0 19.421929585541324 0.0 30 0.0 0.0 0.0 19.671231093957793 0.0 31 2.0334543916514496E-4 0.0 0.0 19.932123292406676 0.0 32 2.0334543916514496E-4 0.0 0.0 20.19403221805138 0.0 33 2.0334543916514496E-4 0.0 0.0 20.446587253494492 0.0 34 2.0334543916514496E-4 0.0 0.0 20.70625937930838 0.0 35 2.0334543916514496E-4 0.0 0.0 20.972845250053886 0.0 36 2.0334543916514496E-4 0.0 0.0 21.23028057603696 0.0 37 2.0334543916514496E-4 0.0 0.0 21.50418688259241 0.0 38 2.0334543916514496E-4 0.0 0.0 21.78521027951864 0.0 39 2.0334543916514496E-4 0.0 0.0 22.054439640973293 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATGTAC 45 3.8380676E-10 45.000004 42 CGTTAGG 45 3.8380676E-10 45.000004 2 TCGGATA 35 1.2100281E-7 45.000004 17 CGAATAC 35 1.2100281E-7 45.000004 45 TTGATCG 20 7.029346E-4 45.0 1 TATCACG 25 3.8875394E-5 45.0 1 TCGCATC 20 7.029346E-4 45.0 44 GTCGATA 20 7.029346E-4 45.0 16 CCGATCG 20 7.029346E-4 45.0 40 CGACAGC 20 7.029346E-4 45.0 13 CCTCGTG 40 6.8012014E-9 45.0 15 TCGATAG 25 3.8875394E-5 45.0 17 ATCCGAT 25 3.8875394E-5 45.0 10 TGTTCGG 20 7.029346E-4 45.0 2 GTACTAT 20 7.029346E-4 45.0 34 CGTGTAC 40 6.8012014E-9 45.0 18 ACGTATG 20 7.029346E-4 45.0 1 GCGCTAG 20 7.029346E-4 45.0 1 CGATCGA 20 7.029346E-4 45.0 41 TGCGTAA 20 7.029346E-4 45.0 1 >>END_MODULE