SRR3551883_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551883_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	763032
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTCTTC	10974	1.4382096687950179	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCG	8252	1.081474957799935	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGC	6535	0.8564516298136907	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTCTT	3810	0.4993237505111188	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTCTTCTGC	3305	0.4331404187504587	TruSeq Adapter, Index 23 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3128	0.4099434886086036	No Hit
GAACTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTCTTCT	2608	0.3417943153104981	TruSeq Adapter, Index 20 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGCCTTTT	2025	0.26538860755512217	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTCT	1711	0.2242369913712662	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTA	1575	0.20641336143176173	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTC	1402	0.183740655699892	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	958	0.12555174619150966	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTCTTCTGC	795	0.10418960148460353	TruSeq Adapter, Index 23 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATAA	20	7.031793E-4	45.000004	20
AACGGTC	20	7.031793E-4	45.000004	35
TCCCGAT	20	7.031793E-4	45.000004	41
ATGCGAG	20	7.031793E-4	45.000004	1
TTACGCG	20	7.031793E-4	45.000004	1
TCGAACC	20	7.031793E-4	45.000004	14
ATTCCGT	25	3.8895683E-5	45.0	12
ACCTAAC	25	3.8895683E-5	45.0	45
CGAATAC	50	2.1827873E-11	45.0	45
CACGTAG	25	3.8895683E-5	45.0	1
GCATCGT	45	3.8380676E-10	45.0	35
GGCGAAC	210	0.0	43.92857	32
CGAATGC	160	0.0	43.593754	45
CTTCGAA	100	0.0	42.75	42
TACGCGG	65	0.0	41.538464	2
CGGCGAA	245	0.0	41.32653	31
CCGATGA	1310	0.0	41.049618	18
CGGTCTA	55	6.002665E-11	40.909092	31
CGTTTTT	1730	0.0	40.708096	1
CGCATCG	50	1.0804797E-9	40.5	21